PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045610.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 378aa    MW: 41941.3 Da    PI: 4.8054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045610.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.4e-211331761559
                           -TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  15 vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+++Hnh 
  HL.SW.v1.0.G045610.1 133 VKGSEYPRSYYKCTHPNCEVKKKVERSH-DGQITEIIYKSNHNHA 176
                           9***************************.***************7 PP
2WRKY34.73.5e-11334355223
                           --SS-EEEEEEE--TT-SS-EE CS
                  WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                           +Dgy+WrKYGqK+vkg+++p s
  HL.SW.v1.0.G045610.1 334 EDGYRWRKYGQKVVKGNPNPSS 355
                           8*******************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.32E-15127178IPR003657WRKY domain
PROSITE profilePS5081115.514128178IPR003657WRKY domain
PfamPF031069.5E-15133175IPR003657WRKY domain
SMARTSM007741.4E-15133177IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-16133178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-11318355IPR003657WRKY domain
SuperFamilySSF1182901.44E-8327355IPR003657WRKY domain
PROSITE profilePS5081114.573328377IPR003657WRKY domain
SMARTSM007741.4E-4333371IPR003657WRKY domain
PfamPF031061.1E-6334355IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEFSTNLTFS PSIYMQNSFV FHKYSQQNDI EEDQAVFMEQ HSNGFELPVE FPEETTTKDC  60
EDSSNGVKVS NNMTMRTAMV DDDAKCLNMK MSPPDVSCDQ TPDLSRKPIH GEYNTSVDIS  120
ERNQFDYYPS VGVKGSEYPR SYYKCTHPNC EVKKKVERSH DGQITEIIYK SNHNHAKPQP  180
NRRPGLGSSA FSFDEVPEVS GGSGISVKVE GGSTWTNYMA STSVSLDKKK INGTNEFAGT  240
PNELSDPLSS VQAQSIELGE ATPEVSTTIC NHDDENGATQ GSISVRDDED DDEPEAKRRK  300
KLNCSSIETT ALSSRAVREP KIVIQIETDV DILEDGYRWR KYGQKVVKGN PNPSSSHVGI  360
KKIVNMGLCG FPHPTEF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875770.11e-110WRKY transcription factor SUSIBA2-like
TrEMBLA0A2P5CUG51e-119A0A2P5CUG5_PARAD; WRKY domain containing protein
STRINGXP_010111075.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.19e-53WRKY DNA-binding protein 34