PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G045284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRAS | ||||||||
Protein Properties | Length: 466aa MW: 52480.5 Da PI: 6.2036 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.6 | 3.1e-139 | 45 | 462 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cA++v++g+le+a+ L+++s+l spdgd+mqR++ayfteALa r+++s+++ly+a+++++ ++see+ +++lf+e++P HL.SW.v1.0.G045284.1 45 LIQLLVACANHVAAGSLENANIGLEHISHLTSPDGDSMQRIVAYFTEALADRMLKSWPGLYRAFNSTKIV--SVSEEILIQRLFFELCP 131 689*************************************************************998887..6**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lk++++++NqaI ea+ege+++HiiD++ sq++Q + Llq+L++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+f HL.SW.v1.0.G045284.1 132 FLKLAYVITNQAIFEAMEGEKMIHIIDLNSSQPAQMIDLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQF 216 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................d 215 n+ ++++le+l++e+Lrvk+gEalaV+ vlqlh+ll + HL.SW.v1.0.G045284.1 217 NP-IVSKLENLDVESLRVKTGEALAVSAVLQLHSLLasdddmhkrnspsmsshlqklslmnqrplkdwlekdshnllsmspesalsplS 304 **.7999***************************************************************************9977542 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 vs + + ++L+++++lsPkv+vv+eqe++ n+ +++er++eal +y alfd+le+++pr+s er+kvE++l+g+ei+n++acegae HL.SW.v1.0.G045284.1 305 --VSGSPKMGSFLSALWGLSPKVMVVTEQESNNNGFTLMERISEALFFYGALFDCLESTIPRTSIERQKVEKMLFGEEIKNIIACEGAE 391 ..333335688****************************************************************************** PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+erhe+lekW rle aGF+ vpls++ ++qa +llr+ + + gy+++ee+g+l+++W+drpL+svSaWr HL.SW.v1.0.G045284.1 392 RTERHEKLEKWILRLELAGFGRVPLSYQGMMQATRLLRQSHvFSGYKIKEENGCLIICWQDRPLFSVSAWR 462 **********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.204 | 19 | 441 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-136 | 45 | 462 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MIKDEGSSSV TSSPLQFCHL LPSPGLGSSY PWMREPKSEE RGLYLIQLLV ACANHVAAGS 60 LENANIGLEH ISHLTSPDGD SMQRIVAYFT EALADRMLKS WPGLYRAFNS TKIVSVSEEI 120 LIQRLFFELC PFLKLAYVIT NQAIFEAMEG EKMIHIIDLN SSQPAQMIDL LQTLSARPEG 180 PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV SKLENLDVES LRVKTGEALA 240 VSAVLQLHSL LASDDDMHKR NSPSMSSHLQ KLSLMNQRPL KDWLEKDSHN LLSMSPESAL 300 SPLSVSGSPK MGSFLSALWG LSPKVMVVTE QESNNNGFTL MERISEALFF YGALFDCLES 360 TIPRTSIERQ KVEKMLFGEE IKNIIACEGA ERTERHEKLE KWILRLELAG FGRVPLSYQG 420 MMQATRLLRQ SHVFSGYKIK EENGCLIICW QDRPLFSVSA WRFRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-64 | 33 | 464 | 7 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106407.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_024028049.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2P5DM64 | 0.0 | A0A2P5DM64_PARAD; GRAS transcription factor | ||||
STRING | XP_010106407.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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