PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G045131.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 682aa MW: 76202.2 Da PI: 7.0943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G045131.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.5	4.2e-29	75	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+k++ gf+rs+k+Ckek+en+ k++k++keg+ ++t + +t+++fdql HL.SW.v1.0.G045131.1 75 RWPRQETLALLKIRQDMDATFRDSSLKGPLWEEVSRKLAVLGFQRSAKKCKEKFENVYKYHKRTKEGRTGKT--DGKTYRFFDQLA 158 8******************************************************************975..5556****96 PP
2	trihelix	106.3	2.1e-33	479	564	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++rr +e ++ ++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a HL.SW.v1.0.G045131.1 479 RWPKSEVQALINLRRTLELKYHENGPKGPLWEEISAGMKRLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFHQLDA 564 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.013	72	134	IPR001005	SANT/Myb domain
Pfam	PF13837	4.3E-18	74	159	No hit	No description
CDD	cd12203	3.04E-23	74	139	No hit	No description
PROSITE profile	PS50090	6.992	74	132	IPR017877	Myb-like domain
SMART	SM00717	1.3E-4	476	538	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-4	477	535	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.642	478	536	IPR017877	Myb-like domain
CDD	cd12203	3.96E-27	478	543	No hit	No description
Pfam	PF13837	3.8E-23	479	565	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MGDASAEAAV AAASVAAVAA QDHVVLRHEE GRGGGDGEGR IVEGNLSNNS AEEDNKLGGE 60 NVDDGGGGDR SGGNRWPRQE TLALLKIRQD MDATFRDSSL KGPLWEEVSR KLAVLGFQRS 120 AKKCKEKFEN VYKYHKRTKE GRTGKTDGKT YRFFDQLAAF EQNHHPPPLQ PPPPPSKPQI 180 IVNSPTTPWT TPPPITTTTP TTTVVTTTYH INNNLQNPTN NIPPSPLVVP LPPTPTPTPT 240 NNTNNNPTLN ISSNNSLFPP QTKSINHLNT TTTIPNLSSS SFPTAAAGTN NNHHHDHHLF 300 SSSSTSSSTA SDEEFQARSG QKRKRKWRDF FRKLTKEVIR KQEEMQKKFL ETVEKSEQAR 360 IVREDAWRLQ EMARVNREHE ILVQERSTAA AKDAAVIAFL QKVSGGSAVV APQNNSSHLF 420 LTNHENSNFH DHLHVPVSLP PLPPQPVVAT PPPRPKLGDN GLSYSANAAT SPVQLSPSRW 480 PKSEVQALIN LRRTLELKYH ENGPKGPLWE EISAGMKRLG YNRSSKRCKE KWENINKYFK 540 KVKDSNKKRP EDSKTCPYFH QLDALYREKT TIKNNVVQNN NGISEKTHFG MEPLMVQPER 600 QWPESSDHEE EEDGEELHEE DEILDEERDS SSTELEEDHH NHHVHNNNNH NNDRDRLHQQ 660 GGTGSYLVVD NKQSSSVDVV E*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MGDASAEAAV AAASVAAVAA QDHVVLRHEE GRGGGDGEGR IVEGNLSNNS AEEDNKLGGE  60
NVDDGGGGDR SGGNRWPRQE TLALLKIRQD MDATFRDSSL KGPLWEEVSR KLAVLGFQRS  120
AKKCKEKFEN VYKYHKRTKE GRTGKTDGKT YRFFDQLAAF EQNHHPPPLQ PPPPPSKPQI  180
IVNSPTTPWT TPPPITTTTP TTTVVTTTYH INNNLQNPTN NIPPSPLVVP LPPTPTPTPT  240
NNTNNNPTLN ISSNNSLFPP QTKSINHLNT TTTIPNLSSS SFPTAAAGTN NNHHHDHHLF  300
SSSSTSSSTA SDEEFQARSG QKRKRKWRDF FRKLTKEVIR KQEEMQKKFL ETVEKSEQAR  360
IVREDAWRLQ EMARVNREHE ILVQERSTAA AKDAAVIAFL QKVSGGSAVV APQNNSSHLF  420
LTNHENSNFH DHLHVPVSLP PLPPQPVVAT PPPRPKLGDN GLSYSANAAT SPVQLSPSRW  480
PKSEVQALIN LRRTLELKYH ENGPKGPLWE EISAGMKRLG YNRSSKRCKE KWENINKYFK  540
KVKDSNKKRP EDSKTCPYFH QLDALYREKT TIKNNVVQNN NGISEKTHFG MEPLMVQPER  600
QWPESSDHEE EEDGEELHEE DEILDEERDS SSTELEEDHH NHHVHNNNNH NNDRDRLHQQ  660
GGTGSYLVVD NKQSSSVDVV E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886444.1	1e-162	trihelix transcription factor GT-2-like
Refseq	XP_028117969.1	1e-162	trihelix transcription factor GT-2-like
TrEMBL	A0A2P5DSH1	0.0	A0A2P5DSH1_PARAD; GAMYB transcription factor
STRING	XP_002532428.1	1e-160	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-83	Trihelix family protein