PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G044901.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 630aa MW: 72714.4 Da PI: 6.7257

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G044901.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.8	6.7e-109	256	627	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL++cAeav+ d++ a++ L r+++++sp+gd++qRla+yf+++ +arl+++ y+al +se s ++ l+a++++ ++P++ HL.SW.v1.0.G044901.1 256 TLLTHCAEAVAGYDQRTATEQLRRIRQHSSPRGDATQRLAHYFANGFEARLTGKKAASYSALISSEMS---FADILKAYQVYITACPFY 341 69*************************************************999999999998888...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++++ aNq+I + +++ + vHiiDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g +e++eet++rL +++e+++vp e+ HL.SW.v1.0.G044901.1 342 RMTFSFANQTIKKLAKNVKNVHIIDFGILYGFQWPELIQRLSQTPGGPPKLRITGIEIPQPGfrPSEKVEETKRRLDNYCERFNVPSEY 430 *********************************************************9************************* PP GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +v +a+++e++++e+L++++ +E ++Vn+ ++l++++de+v ++++rd+vLkl++++sP+++++ + ++++ F++rf eal +ys HL.SW.v1.0.G044901.1 431 TV-IAQKWETIRYEDLNIDRdrDELVVVNCLYRLKHIPDETVVMNNPRDTVLKLIRRISPDLFIHGVVNGTYSANFFMTRFKEALFHYS 518 9.7***********9999*************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 lfd++++ +pr++e r k E+++ gr+i+nv+aceg +r+er et+++W+ r ++aGFk++pl++++ + +k +++ +++ + +e + HL.SW.v1.0.G044901.1 519 PLFDMFDTIVPRQEEYRLKFEKAVYGRDIENVIACEGLDRVERPETYRQWQVRNTRAGFKQIPLDQEIFEAVKNSVHTSYDHNFVIERH 607 ****************************************************************************999** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 ++l++gWk+r+++ +S+W+ HL.SW.v1.0.G044901.1 608 GEWLLQGWKGRRIYCLSFWK 627 *****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.23	228	607	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-106	256	627	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MNDFNFNQGT NQNIVESRER SPHETNHPQL SDSSQSLSLV SVGDSPGSTS TDSFNATLKY 60 LSEILMEEED LERKFLILED PLALQAAEKP FYDVLGQNYP LSSNKGANSS SDSGSRFNTH 120 LSQDSVSDHV HSVDHFRRTG EASSFCYMGK TQIFDLESLE YNVPDEPKGK RSLQREYGES 180 QEESRKIKQS GVYSDDSEAA EMFDRVLLYQ DDSTESTEST VRQKFSQNDQ AKGSGRKARF 240 SKKRDYNKKE TVDLWTLLTH CAEAVAGYDQ RTATEQLRRI RQHSSPRGDA TQRLAHYFAN 300 GFEARLTGKK AASYSALISS EMSFADILKA YQVYITACPF YRMTFSFANQ TIKKLAKNVK 360 NVHIIDFGIL YGFQWPELIQ RLSQTPGGPP KLRITGIEIP QPGFRPSEKV EETKRRLDNY 420 CERFNVPSEY TVIAQKWETI RYEDLNIDRD RDELVVVNCL YRLKHIPDET VVMNNPRDTV 480 LKLIRRISPD LFIHGVVNGT YSANFFMTRF KEALFHYSPL FDMFDTIVPR QEEYRLKFEK 540 AVYGRDIENV IACEGLDRVE RPETYRQWQV RNTRAGFKQI PLDQEIFEAV KNSVHTSYDH 600 NFVIERHGEW LLQGWKGRRI YCLSFWKPT*

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MNDFNFNQGT NQNIVESRER SPHETNHPQL SDSSQSLSLV SVGDSPGSTS TDSFNATLKY  60
LSEILMEEED LERKFLILED PLALQAAEKP FYDVLGQNYP LSSNKGANSS SDSGSRFNTH  120
LSQDSVSDHV HSVDHFRRTG EASSFCYMGK TQIFDLESLE YNVPDEPKGK RSLQREYGES  180
QEESRKIKQS GVYSDDSEAA EMFDRVLLYQ DDSTESTEST VRQKFSQNDQ AKGSGRKARF  240
SKKRDYNKKE TVDLWTLLTH CAEAVAGYDQ RTATEQLRRI RQHSSPRGDA TQRLAHYFAN  300
GFEARLTGKK AASYSALISS EMSFADILKA YQVYITACPF YRMTFSFANQ TIKKLAKNVK  360
NVHIIDFGIL YGFQWPELIQ RLSQTPGGPP KLRITGIEIP QPGFRPSEKV EETKRRLDNY  420
CERFNVPSEY TVIAQKWETI RYEDLNIDRD RDELVVVNCL YRLKHIPDET VVMNNPRDTV  480
LKLIRRISPD LFIHGVVNGT YSANFFMTRF KEALFHYSPL FDMFDTIVPR QEEYRLKFEK  540
AVYGRDIENV IACEGLDRVE RPETYRQWQV RNTRAGFKQI PLDQEIFEAV KNSVHTSYDH  600
NFVIERHGEW LLQGWKGRRI YCLSFWKPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-42	258	627	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106508.2	0.0	uncharacterized protein LOC21407972
Swissprot	Q9XE58	1e-173	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5D676	0.0	A0A2P5D676_TREOI; GRAS transcription factor
STRING	XP_010106508.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]