PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 40671.5 Da PI: 5.5853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.3e-30 | 55 | 196 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+P+deel+ ++L k+ ++++ ++ +iy +P++Lp +k++ ++++fF+k+ ++yatg+rk+r+ HL.SW.v1.0.G044753.1 55 LPAGVKFEPSDEELL-YHLSGKCGVGIiiphvfIDEFIPtLEGEGIYCDHPENLP-GAKKDGSSIHFFHKTINAYATGQRKRRKvqcqq 141 799************.9*****99988776655333333366678**********.556778899******************868888 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk+k+v++ +g ++g kk++v+y +++ +k+ kt+W mh+++l HL.SW.v1.0.G044753.1 142 gstAEHVRWHKTGKTKPVIE-NGVQKGWKKIMVLYksTKKGSKPDKTNWKMHQFHL 196 87666899************.999***********4434667778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-34 | 41 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.733 | 55 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-12 | 56 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MERSWLINSR GIAKKVKNAS RSSAYQIRDC GANRECPNCH HDIDNSDVSS EWPGLPAGVK 60 FEPSDEELLY HLSGKCGVGI IIPHVFIDEF IPTLEGEGIY CDHPENLPGA KKDGSSIHFF 120 HKTINAYATG QRKRRKVQCQ QGSTAEHVRW HKTGKTKPVI ENGVQKGWKK IMVLYKSTKK 180 GSKPDKTNWK MHQFHLGTGE EENEGQYVVS KIFYKQSENS DNSPLIEESD MKVAHEASPK 240 TPISNPPIPP RHGKSIMNDD IADTTLLQSA AKEGDPIGES SLLPQTDILG EDNMDFPWLA 300 GESQADEYYD PNCIDNSLLC KETFDSSSRL TYIPNTDLTG KSIPPCGISD LENLELDTPP 360 DFQLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879019.1 | 1e-171 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 2e-75 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2P5BFR0 | 0.0 | A0A2P5BFR0_TREOI; NAC domain containing protein | ||||
STRING | XP_008230522.1 | 1e-166 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7572 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-99 | NAC domain containing protein 44 |