PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 444aa MW: 47983.6 Da PI: 9.5334 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 210 | 232 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+r++ ++H + H HL.SW.v1.0.G044691.1 210 TCHKCGEQFNRWEAAESHHLSkH 232 7*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 211 | 232 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.45E-21 | 234 | 442 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.1E-7 | 242 | 416 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MPTVWFSLKK SLHCKSEPSE VHDPKSRKHL STILTRKAGR SGCSRSIANL KDVIHGSKRH 60 MEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKISGFN GFQEGVGNGN IGNGSGGSGG 120 NGGGSTFVGT LRPGTPGPGG HSTMHYFNPS FRTSSTPPRK SQFLVSDKEN STEGSGFGGS 180 AIFGGGNSNG VRPSNRISLD ADSNGSSTIT CHKCGEQFNR WEAAESHHLS KHAVTELVEG 240 DSSRKIVEII CRTSWLKSEN HCGRIERVLK VHNMQKTLAR FEEHREMVKM KASKLAKKHP 300 RCLADGNELL RFYGTTLACS LGLSGSSSLC VSEKCSVCRI IRNGFSAKKE LKEGVGVFTT 360 STSGRAFESI EIIEEDPTLR KALIVCRVIA GRVHKPLENI QEITGQVGFD SLAGKVGLYS 420 NIEELYLLNP RALLPCFVVI CKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897979.1 | 0.0 | uncharacterized protein LOC107431545 | ||||
Refseq | XP_015897987.1 | 0.0 | uncharacterized protein LOC107431545 | ||||
TrEMBL | A0A2P5C4K1 | 0.0 | A0A2P5C4K1_TREOI; Zinc finger, C2H2 domain containing protein | ||||
STRING | XP_010267823.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4983 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-158 | C2H2 family protein |