PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 39865.2 Da PI: 4.9705 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.6 | 2.2e-34 | 94 | 200 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasns 85 a++++ ++++hTkv+gR+RR+R++ caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++ + + +s HL.SW.v1.0.G044682.1 94 AVARRMSKDRHTKVEGRGRRIRMPPACAARIFQLTRELGLKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVsvggtL----KIPTTSS 178 788999**********************************************************99999555322220....1111111 PP TCP 86 ssg.kaaksaakskksqksaasal 108 + + ++ a++k+++k+++ + HL.SW.v1.0.G044682.1 179 ARPnGEITEIAPRKRRRKESN--S 200 112212222223333333332..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.599 | 100 | 154 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-27 | 100 | 176 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MDDSQDTNEI IDVNDEEQNN NTTNDISASE TSILEHLPSQ TPAASNFLEV ETVQSSSMVP 60 MKEELTETEQ ELDDSSASTN LIKVPISTTS SGAAVARRMS KDRHTKVEGR GRRIRMPPAC 120 AARIFQLTRE LGLKSDGETI RWLLEHAEPA IIEATGTGTI PAIAVSVGGT LKIPTTSSAR 180 PNGEITEIAP RKRRRKESNS EFIDASHQVS VSSGLAPIAP MAYGAGNGAQ GLVPTWQVGA 240 NNAAAGHFIM FPNSGAVPGM PNQAQLWAFP AAGGATTSFF GVQTRPISNF VSALQPVQLR 300 DPQVSSGSVS SKATTGARAS GSSTMGPTLS SSNTLATSSS GGVGNGDNGT DSTTTTQMLR 360 DFSLEIFDKK ELPLMGRSQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 194 | RKRRR |
2 | 190 | 196 | RKRRRKE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00064 | PBM | Transfer from AT5G51910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106814.1 | 1e-146 | transcription factor TCP19 | ||||
TrEMBL | A0A2P5ER99 | 1e-162 | A0A2P5ER99_TREOI; TCP transcription factor | ||||
STRING | XP_010106814.1 | 1e-145 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-63 | TCP family protein |