PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044638.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 333aa    MW: 36935.9 Da    PI: 9.1592
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044638.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19238271134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  HL.SW.v1.0.G044638.1 238 CTHCEVTNTPQWREGPLGPKTLCNACGVRYRSGR 271
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.952232268IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-15232282IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15234295No hitNo description
Gene3DG3DSA:3.30.50.105.5E-14236269IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.01E-15237294No hitNo description
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17238271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MFKKLDCDEG PKDFDGPKDL PKDIFEMLNF PLEDVEQDID KDDWNDIPLP DLPLDYCVGF  60
TNGLVGVYQN DCSKPNKILP TPYEKACRLK QIPSAAAEST IKTSSAGGKL LSHDSSDVKN  120
VRLFKTSSPV SILESTSSCF TENQMPVDKK FIVPKKRARS KRTRSSNVNK LRSLSFLSST  180
SSSFESLCLE SDSGTVDDGK MFKQSVKKPV RKGKIAFNIP GTETKNFNSQ EQNTTKKCTH  240
CEVTNTPQWR EGPLGPKTLC NACGVRYRSG RLFPEYRPAA SPTFIPSVHS NSHKKVIEMR  300
NKGNQGTKNS SRASVELYCC SQPGNSVRHV FV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159PKKRARS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017101.11e-107GATA transcription factor 11-like
TrEMBLA0A2P5DU171e-121A0A2P5DU17_PARAD; GATA transcription factor
STRINGXP_010089971.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-40GATA transcription factor 11