PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044612.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 828aa    MW: 90406.8 Da    PI: 5.486
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044612.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.7e-182280357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  HL.SW.v1.0.G044612.1 22 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
                          6789*****************************************************97 PP
2START156.42.2e-491543572204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d+  W ++++ +++l vi +g  
  HL.SW.v1.0.G044612.1 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRTSWFRDCRCVDVLSVIPTGng 241
                           68999*****************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSXEEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
                 START  89 galqlmvaelqalsplvpRdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                           g+++l++a + +   +++Rdf+++Ry+ +l++ ++vi+++S++  +  p    ss +vRa +lpSg+li+p+++g+s +++v+hvdl++
  HL.SW.v1.0.G044612.1 242 GTIELTYAPTTL---AAARDFWTLRYTTSLEDNSLVICERSLTTSTGGPAgppSSCFVRADVLPSGYLIRPCEGGGSIIHIVDHVDLDA 327
                           *****9987777...777**************************9999888889*********************************** PP

                           SXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 175 rlphwllrslvksglaegaktwvatlqrqc 204
                           ++++++lr+l++s+ + ++k++ a+l++ +
  HL.SW.v1.0.G044612.1 328 WSVPEVLRPLYESSKILAQKMTIAALRHIR 357
                           *************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-19780IPR009057Homeodomain-like
PROSITE profilePS5007115.7751781IPR001356Homeobox domain
SMARTSM003898.1E-151985IPR001356Homeobox domain
SuperFamilySSF466892.48E-162184IPR009057Homeodomain-like
PfamPF000464.9E-162280IPR001356Homeobox domain
CDDcd000862.87E-162282No hitNo description
CDDcd146868.45E-674111No hitNo description
PROSITE profilePS5084824.358144368IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-20152354IPR023393START-like domain
SMARTSM002341.5E-44153359IPR002913START domain
PfamPF018525.2E-47154357IPR002913START domain
SuperFamilySSF559617.28E-35154361No hitNo description
PfamPF086702.1E-50682826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MALVMHKDSP TNSNYKQMDN SKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSALNKL LMEENDRLQK QASGTTTDNS  120
CESVVMSGQN QQQQNPTPQQ PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLEP TKVAEILKDR TSWFRDCRCV DVLSVIPTGN  240
GGTIELTYAP TTLAAARDFW TLRYTTSLED NSLVICERSL TTSTGGPAGP PSSCFVRADV  300
LPSGYLIRPC EGGGSIIHIV DHVDLDAWSV PEVLRPLYES SKILAQKMTI AALRHIRQIA  360
QEASGEIQYG GGRQPAVLRT FSQRLCRGFN DAVNGFADDG WSLLGSDGVE DVTIVVNSSS  420
NKFLGSQYNA SMFPTFGGVL CAKASMLLQN VPPALLVQFL REHRSEWADY GVDAYSASCL  480
KPSPYAIPCA RPGGFPSSQV ILPLAHTVEN EEFLEVVRLE GQAFSPEEVA LARDMYLLQL  540
CSGVDESAVG SCAQLVFAPI DESFADEAPL LPSGFRVIPL DPKADTPGAT RTLDLASTLE  600
VGSGSARPAS EADASYNLRS VLTIAFQFTF ENHTRDNVAA MARQYVRSVV GSVQRVAMAI  660
APSQLGSQIG PKPLPQSPEA LTLAQWISRS YRMHTGGELF QMDSPSGDAI LKRLWNHSDA  720
IMCCSVKTNA SPVFTFANQA GLDMLETTLV ALQDIMLDKI LDEGGRKNLC SEFSKIMQQG  780
FAYLPAGICV SSMGRPVSYE QAVAWKVLND EDSNHCLAFM FMNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098570.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2P5FT780.0A0A2P5FT78_TREOI; Octamer-binding transcription factor
STRINGXP_010098570.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]