PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G044478.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 157aa MW: 17305 Da PI: 9.7157

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G044478.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	43	81	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++ L++l+ + +K + a++L +A+eYI+ L HL.SW.v1.0.G044478.1 43 ERKEKLGAKIVALQQLVSPY-----GKTDTASVLMEAMEYIQFL 81 56667777888899999888.....9****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.779	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	40	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-8	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.05E-4	42	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
GEEAIVVRKM TEHKRSPCSV DQSSFPSLAS KRQKPDLLIS TKERKEKLGA KIVALQQLVS 60 PYGKTDTASV LMEAMEYIQF LHEQVKVLSA PYLQSTPPTK IQEMEAYKLR NRGLCLVPVS 120 CTLGVARSNG ADIWAPIKTT SPKFDSSSSI THSQFH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010101389.2	1e-90	transcription factor bHLH153 isoform X1
Swissprot	Q7XJU2	4e-59	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A2P5DWM3	1e-90	A0A2P5DWM3_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRING	XP_008222500.1	3e-86	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10813	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	2e-61	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]