PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044461.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 560aa    MW: 61921.3 Da    PI: 7.4653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044461.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16741135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  HL.SW.v1.0.G044461.1  7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                          ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-11545No hitNo description
CDDcd002022.51E-17654No hitNo description
PfamPF003203.8E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
PfamPF139197.0E-8291382IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDH  60
RIAKVKSISI IKNKEVKLLK RKQNYDSMVV GGVATDYNQG FRKVMEEDAS NRSSSGSAIS  120
NSESCAQFGG GDASDLTGWI FIKIETGLDT SPAQSNVWDT TVPSRKRTCV VRPKQSPVEK  180
LTKDLYSILQ EQQSSYFSGS SEEDLLFESE TPMVSVEIGH GSVLIRHPNA ITREEESEAS  240
SLSFDNKNSH SNEAYSHSTN LHDSKGITFI GSGSEKINFA GHGMEQEQLK REKSQHEIFQ  300
MLGSHNSPLR QIDLNDAVDF EEFRRHLTSD EQQQLLKYLP SIDVAKFPDS LKSLFESPQF  360
RENMTSFQQL LAEGIFDMSF SGAKPEDCKT LKKLVLNNFS KSKWVEHLQL LKNSKNSSRG  420
SSISGPNVAA SSNKRPQDNQ NKKFPGKPKR SKEIGKVKIV MKSPKRVIMK GGYDKKEIID  480
NDGSCFSPRS LFATSPDGSS FLLDPINFVE ESSDQDLLLD VPSNGSFAQA ELLLPTISFG  540
SQQASTSSSS ISPHHHAHP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104842.10.0GATA transcription factor 26
SwissprotQ8W4H11e-150GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2P5CU960.0A0A2P5CU96_PARAD; GATA transcription factor
STRINGXP_010104842.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-149GATA transcription factor 26