PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044429.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 414aa    MW: 45329.9 Da    PI: 8.9899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044429.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.91.2e-2495151259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e++++ ++v+e++Y+++H+h+
  HL.SW.v1.0.G044429.1  95 SDGYNWRKYGQKQVKSPQGSRSYYKCTYSECCAKK-IECCDHSGHVTEVVYKSQHTHD 151
                           7********************************98.*********************7 PP
2WRKY96.51.8e-30275332259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            Dg++WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+
  HL.SW.v1.0.G044429.1 275 ADGHRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNAIIITYKGVHDHD 332
                           6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-2191153IPR003657WRKY domain
SuperFamilySSF1182908.37E-2093153IPR003657WRKY domain
SMARTSM007742.2E-2394152IPR003657WRKY domain
PROSITE profilePS5081117.25995153IPR003657WRKY domain
PfamPF031063.3E-1796151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-31259334IPR003657WRKY domain
PROSITE profilePS5081131.031269334IPR003657WRKY domain
SuperFamilySSF1182909.94E-27270334IPR003657WRKY domain
SMARTSM007749.0E-35274333IPR003657WRKY domain
PfamPF031062.2E-23276331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
GQIDNTRNEV VTGTMVQCLD APKEKQHQSN ACRTLSELSP TSVTQSISSA PSPILLEQRL  60
SPPKDNDLCT PVPKKRNSSD LKIVSSVPAV KIPASDGYNW RKYGQKQVKS PQGSRSYYKC  120
TYSECCAKKI ECCDHSGHVT EVVYKSQHTH DPPKKSNNTR ENKLTSAERF PGYNVAKQPC  180
KVPKDSEPST SAKESTHETP PCSERKRENL VNTDENGDPK VKEELDNEPE QKKRQVSSEV  240
VSSIKSNVEY AGSILKSSKK PKFVVHAAGD VGISADGHRW RKYGQKMVKG NPHPRNYYRC  300
TSAGCPVRKH IETAVDNTNA IIITYKGVHD HDMPVPKKRH GPPSAPLVAA AAPASMNSLQ  360
LKKSDATPNQ VSSTQWSVDN EGELTGEALD LGGEKAMESA RTLLSIGFEI KPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-25262334274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016991.10.0probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-124WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2P5FNQ30.0A0A2P5FNQ3_TREOI; WRKY domain containing protein
STRINGXP_010086863.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-117WRKY DNA-binding protein 32