PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 16993.4 Da PI: 7.2148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.5e-20 | 15 | 67 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+G+r+++ +g+++AeIrdps+ng +r +lg+f taeeAa+a+++a+ +++g+ HL.SW.v1.0.G044316.1 15 SRYRGIRRRP-WGKFAAEIRDPSKNG--ARLWLGTFETAEEAARAYDRAAFAFRGH 67 79********.***********9998..*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-14 | 15 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-24 | 15 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.92E-29 | 15 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 16 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-39 | 16 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.027 | 16 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MEGQRAENEN KGRDSRYRGI RRRPWGKFAA EIRDPSKNGA RLWLGTFETA EEAARAYDRA 60 AFAFRGHLAI LNFPNEFQHQ NSHHNFSSSS SSSTSSSSVS AAHGHGGHGQ SYDFGSFQSG 120 QGSSGCASGV IEFEYLDDKL LEDLLDCESR QGKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-29 | 17 | 74 | 6 | 63 | ATERF1 |
3gcc_A | 3e-29 | 17 | 74 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031496.1 | 5e-54 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2P5CNK9 | 1e-58 | A0A2P5CNK9_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_008235691.1 | 2e-49 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-21 | ERF family protein |
Publications ? help Back to Top | |||
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