PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044202.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 479aa    MW: 54606.4 Da    PI: 10.3096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044202.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-162065147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg W + Ede+l ++v ++G+ +W+ Ia+++  gR++k+c++rw++ 
  HL.SW.v1.0.G044202.1 20 RGHWRPGEDEKLRELVDRYGPQNWNFIAEHLE-GRSGKSCRLRWYNQ 65
                          899*****************************.************96 PP
2Myb_DNA-binding50.54.8e-1672116147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++++T+eE+e+l+ a++ +G++ W+ Ia+++  gRt++ +k++++ +
  HL.SW.v1.0.G044202.1  72 KKPFTEEEEERLLAAHRIYGNK-WACIAKYFH-GRTDNAVKNHYHVV 116
                           689*******************.*********.***********976 PP
3Myb_DNA-binding50.93.6e-16183228147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ede+l ++v ++G+ +W+ Ia+++  gR++k+c++rw++ 
  HL.SW.v1.0.G044202.1 183 RGHWRPGEDEKLRELVDRYGPQNWNFIAEHLE-GRSGKSCRLRWYNQ 228
                           899*****************************.************96 PP
4Myb_DNA-binding50.54.8e-16235279147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++++T+eE+e+l+ a++ +G++ W+ Ia+++  gRt++ +k++++ +
  HL.SW.v1.0.G044202.1 235 KKPFTEEEEERLLAAHRIYGNK-WACIAKYFH-GRTDNAVKNHYHVV 279
                           689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.6221570IPR017930Myb domain
SuperFamilySSF466891.32E-2818113IPR009057Homeodomain-like
SMARTSM007175.9E-141968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-262173IPR009057Homeodomain-like
CDDcd001675.80E-122364No hitNo description
PfamPF139215.5E-172383No hitNo description
PROSITE profilePS5129418.96671121IPR017930Myb domain
SMARTSM007171.4E-1371119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2074119IPR009057Homeodomain-like
CDDcd001671.37E-483117No hitNo description
PROSITE profilePS5129424.622178233IPR017930Myb domain
SuperFamilySSF466891.32E-28181276IPR009057Homeodomain-like
SMARTSM007175.9E-14182231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-26184236IPR009057Homeodomain-like
CDDcd001675.80E-12186227No hitNo description
PfamPF139215.5E-17186246No hitNo description
PROSITE profilePS5129418.966234284IPR017930Myb domain
SMARTSM007171.4E-13234282IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-20237282IPR009057Homeodomain-like
CDDcd001671.37E-4246280No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGRSSSDISS DHGGGKNCYR GHWRPGEDEK LRELVDRYGP QNWNFIAEHL EGRSGKSCRL  60
RWYNQLDPNI NKKPFTEEEE ERLLAAHRIY GNKWACIAKY FHGRTDNAVK NHYHVVMARR  120
KRERLSSSSS SSSSQIIAHH HHHNNNNNNP HHHHHIQRKT LAHMGRSSSD ISSDHGGGKN  180
CYRGHWRPGE DEKLRELVDR YGPQNWNFIA EHLEGRSGKS CRLRWYNQLD PNINKKPFTE  240
EEEERLLAAH RIYGNKWACI AKYFHGRTDN AVKNHYHVVM ARRKRERLSS SSSSSSSQII  300
AHHHHHNNNN NNPHHHHHMV TTNNNKSTIT TTSFTSTYNP KLGFLKFQTG PGHAPAATAR  360
DHHHHQKMRI WGILSSSSST SNSFGTSASA TTISRDHHHH VLGLGSVVPN NHRPKDVGLG  420
LLNNPHGLGI EENSSVNGNK SKLQVMRVGM ASQKENKDHH QVPFIDFLGV DRVNFISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31142831107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090845.23e-80transcription factor CSA
SwissprotQ5NBM81e-56CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A2P5E8W71e-105A0A2P5E8W7_TREOI; MYB transcription factor
STRINGXP_010090845.12e-79(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.18e-55myb domain protein 69
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]