PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 27181.1 Da PI: 4.422 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 6.9e-38 | 7 | 108 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf+ ++ +++fa+vhk+FGasnv+kll +lp + r+da+s++ +eA ar+rdP+yG+v+ i++lqqq++ HL.SW.v1.0.G044093.1 7 SCGACKFLRRKCSSECIFAPYFCYDEaANNFAAVHKVFGASNVSKLLLHLPLHCRSDAASTISFEAVARMRDPIYGCVAQIFALQQQVA 95 6***********************9878************************************************************* PP DUF260 89 qlkaelallkeel 101 l++e++ l++++ HL.SW.v1.0.G044093.1 96 YLQEEIEILGNQI 108 *******998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.772 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTGFGSSCGA CKFLRRKCSS ECIFAPYFCY DEAANNFAAV HKVFGASNVS KLLLHLPLHC 60 RSDAASTISF EAVARMRDPI YGCVAQIFAL QQQVAYLQEE IEILGNQIAH NATTGFASCG 120 SSSEGTVNNS NTTHNNNLDY ASQLFSHDGV LNSQYYQNQQ EILLSQNQNS TGNSSNQVVD 180 GQMGFQLRQN PCGWGDENMV CNSLSDPLEK LFQGIEQESF GNNPWLDEIP NMENFIGPQS 240 GTETILW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 3 | 102 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096608.1 | 1e-108 | LOB domain-containing protein 33 | ||||
TrEMBL | A0A2P5BAL0 | 1e-122 | A0A2P5BAL0_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010096608.1 | 1e-107 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-54 | LOB domain-containing protein 33 |