PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043892.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 338aa    MW: 37736.6 Da    PI: 4.7703
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043892.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34431342102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k++e++ed++++ ++sws   nsfvv+d+++f++ +Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+
  HL.SW.v1.0.G043892.1  43 FLTKTFEMVEDPSTDAIVSWSIARNSFVVWDSHKFSTLLLPRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLGGQ 122
                           9********************888*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++ikr+++
  HL.SW.v1.0.G043892.1 123 KHLLKTIKRRRH 134
                           *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3339132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEGVMVKEEE TTTFIAAGSS SSSSSNQSPQ PMEGLHDVGP PPFLTKTFEM VEDPSTDAIV  60
SWSIARNSFV VWDSHKFSTL LLPRYFKHGN FSSFVRQLNT YGFRKVDPDR WEFANEGFLG  120
GQKHLLKTIK RRRHVSQSIP HQFGACGIEV GQFGIETELE RLKRDRAVLM AEIVKLKQQQ  180
HDSVMKVTAM EDRLLLTERK QQQMLTFLAK AMNNPTFIQQ FAQRNKLRGG AGVRKRRLPA  240
ATAVDLEMET LLSAAMDEQS SSSGGNRLDG VGEGIWDEML SEELMLSGNE PDEDGGVLGF  300
GDESAVVVDD LIAEPEEWGE EELQELVDQM GYLRSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254113218120Heat shock factor protein 1
5d5u_B2e-254113227129Heat shock factor protein 1
5d5v_B2e-254113227129Heat shock factor protein 1
5d5v_D2e-254113227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536555.11e-144heat shock factor protein HSF30
SwissprotP411521e-119HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2P5FE001e-163A0A2P5FE00_TREOI; Heat shock transcription factor
STRINGEMJ245101e-139(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-111heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]