PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043711.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 362aa    MW: 39291.3 Da    PI: 10.0724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043711.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-30289346359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe +Hnh+
  HL.SW.v1.0.G043711.1 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYECDHNHT 346
                           99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-16240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-32275346IPR003657WRKY domain
PROSITE profilePS5081129.677282348IPR003657WRKY domain
SuperFamilySSF1182901.31E-25284346IPR003657WRKY domain
SMARTSM007748.2E-34287347IPR003657WRKY domain
PfamPF031061.2E-25289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVELMMAYG LDSFTSNMEE NSVKEAVSAG IQSVEKFLRL ISQHDNYLHQ HQQVADVAVT  60
KFKRVISLLD RGRTGHARFR RSPSNPMSSS SSPSSSSSTP PPPPPQRQDG PGQDPSGSSS  120
PFQHNSNPKQ ELASAFKVYC PTPVLRLPPL PQNQNQVQSR QNHPMNSVVL APRNGSLEKK  180
DTVVSAATIN FSPSPCISGA NSFMSSLTGD TDSTVQPSFS SGFQLTSSTG RPPLSTSSFK  240
RKCNSVDAGA MRCGSSSGRC HCSKKRKSKV KRVVRVPAIS MKMADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPTMLIVTYE CDHNHTHSVT EATAALVLES  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19275345271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093526.11e-157probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2P5CVE41e-163A0A2P5CVE4_PARAD; WRKY domain containing protein
STRINGXP_010093526.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-81WRKY DNA-binding protein 7