PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043700.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 368aa    MW: 39591.6 Da    PI: 7.0912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043700.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.13.2e-3483209293
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 
                            +k+ +++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt                         
  HL.SW.v1.0.G043700.1  83 VAKRASTKDRHRKVEGRGRRIRIPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkiptatpdpep 171
                           5799************************************************************5444444444444444433322222 PP

                   TCP  66 .ssssaseceaesssssasnsssg..............................kaaks 93 
                            +                     +                               +a++
  HL.SW.v1.0.G043700.1 172 dD---------------------PilkkkrkrpvnseyvdvneavsvsaglaplTQAQQ 209
                           20.....................022222222233333334443334333333322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2888206IPR005333Transcription factor, TCP
PROSITE profilePS5136925.55389143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAMIQNHEVQ EEKGRKVAEL KINGGGEAEQ NDVVAEEQTN QTLSLNEAAP TSSSVEPKEE  60
PEERSSADAL QLVPLAVQVT GPVAKRASTK DRHRKVEGRG RRIRIPAACA ARIFQLTREL  120
GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KIPTATPDPE PDDPILKKKR  180
KRPVNSEYVD VNEAVSVSAG LAPLTQAQQE HQQHQHQHQS VPQGFVPMWT IPSNAVVPGA  240
FFVVPPMASV AGHNNTPSTT QPHIFTFPTT TTPFINISAT RPISSFVSSM ANFVTAPVQF  300
QATTTTTNLS SINSAQKSPP MAAPSVNSDT PTAAATTTTA TPQMLRDFSL EIYDKKELQF  360
MTRSSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175182LKKKRKRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904289.11e-130transcription factor TCP9
SwissprotO646476e-83TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2P5EI001e-145A0A2P5EI00_TREOI; TCP transcription factor
STRINGevm.model.supercontig_18.1761e-130(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-64TCP family protein