PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043695.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 286aa    MW: 31455.9 Da    PI: 8.6112
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043695.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.84.1e-3149107257
           ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmps..egee.gtaaalkCaACgCHRnFHRrev 57 
                           ++v+Y+eC++NhAas+Ggha DGCgEfmp    +e+ g++++l+CaACgCHRnFHRrev
  HL.SW.v1.0.G043695.1  49 NNVKYRECMRNHAASIGGHANDGCGEFMPGgaANEDvGSVESLTCAACGCHRNFHRREV 107
                           689*************************96113444689******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.0E-2750107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1751107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-2852107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.34553106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.15E-19185255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-29186255IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-25195251IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDLSVVPYKH HHRHHLQSTK AENENEDGDV VEPKSSSEKN EHKSNNSNNN VKYRECMRNH  60
AASIGGHAND GCGEFMPGGA ANEDVGSVES LTCAACGCHR NFHRREVLLG GIPYSPPPHP  120
MALLYNAGTT TPRWDPKMVV GPRRNHHTSH RNGARGIHDD GSDKEYDRRS SETPDREDNI  180
LAPASGSAAS GGSGKRFRTK FTAVQKDRML EFAESIGWRI QRQDEGAINQ FCSQIGVKRN  240
VLKVWMHNNK NAHRRREPLP APSSTLPEPP PSLPHTAVQP PAVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-231952521875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104483.11e-102zinc-finger homeodomain protein 2
TrEMBLA0A2P5EHM81e-140A0A2P5EHM8_TREOI; Octamer-binding transcription factor
STRINGXP_010104483.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-50homeobox protein 31