PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043560.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

VOZ

Protein Properties

Length: 449aa MW: 50230.5 Da PI: 5.0929

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043560.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	416.3	5.2e-128	213	429	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 pppsaf+gpkcalwdc+rpaqgs+w+qdycss+h++lalneglpg++pvlrp+gi++kd++lf al+ k+qgkevgipecegaa++k+p HL.SW.v1.0.G043560.1 213 PPPSAFMGPKCALWDCSRPAQGSKWCQDYCSSCHSVLALNEGLPGIAPVLRPGGIGMKDSPLFCALNLKIQGKEVGIPECEGAANTKCP 301 89************************************************************************************* PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178 wna+elfdl+llege +rewlffdkpr+afesgnrkqr lpdy+grgwhesrkqvmkefgglkrsyymdpqp++s+ewhl+eyein++ HL.SW.v1.0.G043560.1 302 WNAPELFDLCLLEGEKLREWLFFDKPRKAFESGNRKQRGLPDYNGRGWHESRKQVMKEFGGLKRSYYMDPQPLTSHEWHLFEYEINNYT 390 ************************************************************************************* PP VOZ 179 alalyrlelklvdekksakgkvskdsladlqkklgrlta 217 ++ lyrlelkl ++kks+kgkv kdsladl+kk+grlta HL.SW.v1.0.G043560.1 391 TCGLYRLELKLIEGKKSPKGKVLKDSLADLRKKMGRLTA 429 ***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MLSDSKSKCE SVSHQNLKEK TKHRVDDLQR IFSNLESARK DSRPGDIAVF EEQVHQMLRE 60 WKVELSEPTP ASSLLGGSLG SFSEELARLL QQYDVEDDAT SPLKELPLPK PEPEPDPEPN 120 LENFDAGNFS VFELDYFDNK ESQDLSFQGF PELKGSGVDF HETGPNDSNF VTGLEPHQFD 180 IYQDINQGLI VGANSTNQCA QDTLPNVLPN ISPPPSAFMG PKCALWDCSR PAQGSKWCQD 240 YCSSCHSVLA LNEGLPGIAP VLRPGGIGMK DSPLFCALNL KIQGKEVGIP ECEGAANTKC 300 PWNAPELFDL CLLEGEKLRE WLFFDKPRKA FESGNRKQRG LPDYNGRGWH ESRKQVMKEF 360 GGLKRSYYMD PQPLTSHEWH LFEYEINNYT TCGLYRLELK LIEGKKSPKG KVLKDSLADL 420 RKKMGRLTAE APVDDGNSSR TRADTVRK*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MLSDSKSKCE SVSHQNLKEK TKHRVDDLQR IFSNLESARK DSRPGDIAVF EEQVHQMLRE  60
WKVELSEPTP ASSLLGGSLG SFSEELARLL QQYDVEDDAT SPLKELPLPK PEPEPDPEPN  120
LENFDAGNFS VFELDYFDNK ESQDLSFQGF PELKGSGVDF HETGPNDSNF VTGLEPHQFD  180
IYQDINQGLI VGANSTNQCA QDTLPNVLPN ISPPPSAFMG PKCALWDCSR PAQGSKWCQD  240
YCSSCHSVLA LNEGLPGIAP VLRPGGIGMK DSPLFCALNL KIQGKEVGIP ECEGAANTKC  300
PWNAPELFDL CLLEGEKLRE WLFFDKPRKA FESGNRKQRG LPDYNGRGWH ESRKQVMKEF  360
GGLKRSYYMD PQPLTSHEWH LFEYEINNYT TCGLYRLELK LIEGKKSPKG KVLKDSLADL  420
RKKMGRLTAE APVDDGNSSR TRADTVRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093981.2	0.0	transcription factor VOZ1 isoform X2
Refseq	XP_024019795.1	0.0	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	1e-171	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2P5E7P1	0.0	A0A2P5E7P1_TREOI; Cytochrome c-like domain containing protein
STRING	XP_010093981.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-161	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]