PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043373.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 505aa    MW: 54940.4 Da    PI: 8.3031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043373.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33248304259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g Hnhe
  HL.SW.v1.0.G043373.1 248 DDGFNWRKYGQKQVKGSEYPRSYYKCTYSNCPVKKKVERSP-DGQITEIIYKGMHNHE 304
                           7****************************************.***************8 PP
2WRKY106.71.1e-33428486159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++dpk+v++tYeg+Hnh+
  HL.SW.v1.0.G043373.1 428 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSTGCNVRKHVERASTDPKAVITTYEGKHNHD 486
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-29242306IPR003657WRKY domain
SuperFamilySSF1182902.62E-26245306IPR003657WRKY domain
SMARTSM007747.6E-36247305IPR003657WRKY domain
PfamPF031066.1E-26248304IPR003657WRKY domain
PROSITE profilePS5081123.629248306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37413488IPR003657WRKY domain
SuperFamilySSF1182901.24E-29420488IPR003657WRKY domain
PROSITE profilePS5081139.031423488IPR003657WRKY domain
SMARTSM007741.1E-39428487IPR003657WRKY domain
PfamPF031062.2E-26429486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAKNEDPERV SFSGATVPPP PLGLVRPTLT LPPRPSMEAF FSGGAGASPG PLTLVSRFFA  60
DSGPDSDYRS FTQLLAGAIA SPLARPTFNF DNSADNYAKG GDGRDKDSGF KQSRPMNLVV  120
AANSPLFMVP PGLSPSGLLN SPGFFSPPSP FGMSHQQALA QVTAQAAFAQ SQFPMQVEYK  180
PSLVSAASTE THTQSVEPSY IKSEVSQQQQ QAVPSTSEQR SSAMESSGPS HSDRKYQPPP  240
AVNDKPGDDG FNWRKYGQKQ VKGSEYPRSY YKCTYSNCPV KKKVERSPDG QITEIIYKGM  300
HNHEMPQPNK RAKDSHDTNG HANNQVKSEM NSQNRNGGNL QRPNETGQSQ LGHERDRESA  360
QGAPVQVPGS SDSEDVVDAD VREDEGNADE PNAKRRNIEV GTSEVSLSHK TVTEPKIIVQ  420
TRSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTSTGCN VRKHVERAST DPKAVITTYE  480
GKHNHDVPAA RNSSHNTANN NAHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40248489878Probable WRKY transcription factor 4
2lex_A2e-40248489878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089564.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-145WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLW9QTC50.0W9QTC5_9ROSA; Putative WRKY transcription factor 3
STRINGXP_010089564.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-110WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]