PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043298.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 303aa MW: 33228.7 Da PI: 7.101

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043298.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	3.9e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl HL.SW.v1.0.G043298.1 46 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-32	43	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	46	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	46	100	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	6.7E-15	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MFPRLIQTHE GIMGQDDIQM QGIGSNHGLN QNLRGDPCLV LTSDPKPRLR WTADLHERFV 60 DAVTQLGGAS KATPKAIMRT MNVKGLTLFH LKSHLQKYRL GIQSGKDMDS PRTGNSSPNL 120 PTSDMNEGYE VKEALRAQME VQSKLHLQVE AEKHLQIRQN AERRYMAMLE RACKMLADQF 180 IGGSVIDMEH QKYQGLGSKT PISHTVDPLG FYSSQSTEVA GVQGPEEVPN SLCPLRADCS 240 TESCLTSHES PGGLTQGSPG GGKKSMLSLD STASLIWNET KVRTQEVNVN QVDHLGITNY 300 GM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-19	46	99	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	46	99	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	46	99	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	46	99	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021467.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q8LAJ7	4e-59	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2P5DY68	0.0	A0A2P5DY68_TREOI; Octamer-binding transcription factor
STRING	XP_010096512.1	1e-162	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	4e-61	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]