PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G043118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 23538 Da PI: 9.0653 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H HL.SW.v1.0.G043118.1 60 FECKTCNKRFSSFQALGGHRASH 82 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +Fs L H+r+H HL.SW.v1.0.G043118.1 112 HVCTICGVVFSMGQALGGHMRRH 134 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.533 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.83E-6 | 60 | 134 | No hit | No description |
Pfam | PF13912 | 1.8E-12 | 60 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-11 | 112 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLMMMKKRMR EEADDETSRL NTSIANCLML LQSHNQIMTM NHNNNPSSVA VAATPSGHDF 60 ECKTCNKRFS SFQALGGHRA SHKKPKLAND GDHHDHHGHE DEYNKKVVNK KHVCTICGVV 120 FSMGQALGGH MRRHRAAMDN GVGFSSLLTA AAEEGGPVVV APRNPPLVAL KRSDSIRIKA 180 DSWLDLNLTP LENDLKILFG KMAPAPAVNS SFIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097386.1 | 1e-48 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A2P5DHR7 | 3e-65 | A0A2P5DHR7_PARAD; TFIIH C1-like domain containing protein | ||||
STRING | XP_010097386.1 | 6e-48 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-40 | C2H2 family protein |