PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G043014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 143aa MW: 16360.8 Da PI: 8.5191 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.8 | 3.6e-16 | 7 | 90 | 14 | 96 |
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 ++ + e+P r+kki+k d+d+k++ aea l+s + elf+ l+ rs a e+kr+ +k i aav+r + + dfl+d HL.SW.v1.0.G043014.1 7 EETIRPEIPTGRVKKIMKLDKDIKKVNAEALFLISCSTELFLRFLAERSAEVAIEKKRKIVKLEHIRAAVKRHQpTSDFLLDSL 90 45556799***************************************************************976489****975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-19 | 5 | 77 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.18E-17 | 6 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.6E-18 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MMDEEKEETI RPEIPTGRVK KIMKLDKDIK KVNAEALFLI SCSTELFLRF LAERSAEVAI 60 EKKRKIVKLE HIRAAVKRHQ PTSDFLLDSL HLPPQRSDNQ PSDRNHSRNV AEKLVPVGTR 120 RIDDFFSKSA NENEAPIEIN ES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026035.1 | 5e-67 | DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A2P5BPF7 | 9e-69 | A0A2P5BPF7_PARAD; Nuclear transcription factor Y subunit C | ||||
TrEMBL | A0A2P5EBH0 | 1e-68 | A0A2P5EBH0_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | POPTR_0001s13970.1 | 1e-60 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11105 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-42 | nuclear factor Y, subunit C13 |