PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042777.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 923aa    MW: 102835 Da    PI: 6.7154
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042777.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23132233199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F
  HL.SW.v1.0.G042777.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLF 218
                           99*****************************96555555..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++ +l+++++r+
  HL.SW.v1.0.G042777.1 219 I--WNEKNQLLLGIRRA 233
                           *..8899999****997 PP
2Auxin_resp121.65.9e-40258341183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  HL.SW.v1.0.G042777.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 341
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-49117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-42125247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-21131232No hitNo description
PROSITE profilePS5086312.52132234IPR003340B3 DNA binding domain
PfamPF023628.7E-22132233IPR003340B3 DNA binding domain
SMARTSM010192.1E-24132234IPR003340B3 DNA binding domain
PfamPF065078.2E-35258341IPR010525Auxin response factor
PfamPF023091.1E-6784870IPR033389AUX/IAA domain
SuperFamilySSF542772.68E-7788862No hitNo description
PROSITE profilePS5174525.328788872IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MRLSSSSSSS GFNHQAQEGE KKCLNSELWH ACAGPLVSLP PVGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGTPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYTQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGLPSFH ALKDGDMSIN SPLMWLQGGV GDPALQSLNF  420
QGLGITPWMQ PRLDASMAGL QPDVYQAMAA AALQEMRGVD PSKCSPQSLL PFQQSQNRQH  480
QQQHQQQHQQ QHQQQQQQQH QQQHQQQQHQ QHQQQHQQQQ HQQHQQQHQQ QQHQQQHQQQ  540
QHQQQQHQQQ HQQQQLQPSQ QLHQLSVQQQ IPNVMSALSN FSSGSQSQSP SLQAIPSQCQ  600
QPSFPDSVGN PISSSDVSQI HSILGSLSQN GGSQLLNLSG SNSVISSSSL LAKQISVEPQ  660
ISSGASQSVL PQVEQLGPQS NVSDLATLPP FPGREYSAYH GAADPQSNLL FGVNIDSSSL  720
MLQNGMSNLR NIGSENDSLS MPFGSSNYSS AAGADFPLNS DMTTSSCVDE SGFLQSSENG  780
DQVNPLTRTF VKVHKSGSFG RSLDISKFSS YDELRSELAR MFGLEGQLED PQRSGWQLVF  840
VDRENDVLLL GDDPWQEFVN NVWYIKILSP LEVQQMGKEG LTPASSVSNH KVSNSSNACD  900
DYINRQDLRN SSNGIPSMGN LDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661736243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0726360.0KR072636.1 Boehmeria nivea auxin response factor (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027835.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010106165.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]