PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042551.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 604aa    MW: 63811.9 Da    PI: 6.7889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042551.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30330388259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  HL.SW.v1.0.G042551.1 330 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 388
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925324390IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-31326390IPR003657WRKY domain
SuperFamilySSF1182904.45E-26327390IPR003657WRKY domain
SMARTSM007741.4E-37329389IPR003657WRKY domain
PfamPF031061.4E-25331388IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MCSFLFEQRK NIKNITMDEH TISSNSSSNN INTIINNFQG DLTDIVRLRP GGVAGLAPAS  60
SSSSNSHHHH PHLDVVSGYE EDLLLHNMSN DNTNNSSCGG GGGGGAWQLF SSADPLVMNY  120
FGDPFSNLRP DPLLHHHMTA AAPGLFGSPN SSSPTRASDL VNGGGGGVGF CSGVNGLVGP  180
SHEDMNMMSS TNSSGGGISG RPSCNIFSRM LQINPTSANS CSSTPTTAIA SKLPCNSNTT  240
TNTTSSSQGG DSPSPSPPPP SMAVASPRGI NVNSSQQGGC LVDNNSSGGH QISSPRNPGI  300
KRRKSQAKKV VCIPAPAAAN SRATGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  360
CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSQPSKNTPN SIKNTPLMSS  420
QLQKSNVSSP KEDSAHQLNN NKEMGMMTHS QNDNSNAVVG GGGSTSSATS ASVKEENVDH  480
EVHDYDHEID EKLDQLDDSS CHDHQFNSDE VVGLFPYRPT MPGPNPTAAS ADQDFFADLG  540
EIEADPLNLL FSQGFNSVDH DHQHKGMLIS KGLDPFNLFD WSGGGGGATI DAAAQRGVRQ  600
GNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-25304391280Disease resistance protein RRS1
5w3x_D1e-25304391280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494248e-36AC149424.1 Populus trichocarpa clone Pop1-011N15, complete sequence.
GenBankAC1494258e-36AC149425.1 Populus trichocarpa clone Pop1-041F22, complete sequence.
GenBankAC1494268e-36AC149426.1 Populus trichocarpa clone Pop1-053A03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098516.21e-146probable WRKY transcription factor 35
TrEMBLA0A2P5CRQ80.0A0A2P5CRQ8_PARAD; WRKY domain containing protein
STRINGXP_010098516.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-72WRKY DNA-binding protein 35