PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042251.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 301aa    MW: 31831.8 Da    PI: 9.5556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042251.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08106131227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ f     Ck+G++C+FaHg+
  HL.SW.v1.0.G042251.1 106 KTRLCNKFNSAEGCKFGEKCHFAHGE 131
                           8***********************96 PP
2zf-CCCH32.61.4e-10267291126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C++f + G C +G+rC+FaHg
  HL.SW.v1.0.G042251.1 267 FKTKICDNFTK-GSCTFGERCHFAHG 291
                           69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-53863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.74562No hitNo description
Gene3DG3DSA:4.10.1000.104.9E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027104131IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.63E-15158238IPR004088K Homology domain, type 1
SMARTSM003223.8E-12167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.0E-16167236IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257168232IPR004088K Homology domain, type 1
PfamPF000131.6E-11170234IPR004088K Homology domain, type 1
CDDcd001057.32E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-15263297IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7266292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8266296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108266293IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEYDGGRKRA RVEASFNGNG GFKKSKPEME SFTHGIGSKS KPCTKFFSTA GCPFGEGCHF  60
LHYVPGGLKT VSHLINVGGS PALPPSARNP VAPPSFPDSS SPQAVKTRLC NKFNSAEGCK  120
FGEKCHFAHG EWELGKPTLP SYEDHRGRMG GRMEPPPSHG LAASFGASST AKISVDSSLA  180
GAIIGKNGVN SKQICRATGA KLSIRDHETD PNLRNIELEG TFDQIKQAST MVRELIVNVG  240
SSMAANHTKS HHGGGGTGHS SSTGSNFKTK ICDNFTKGSC TFGERCHFAH GAHELRKTGI  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-166zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-110C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW9QK761e-156W9QK76_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010087387.11e-157(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-83C3H family protein