PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G042192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 235aa MW: 25865.4 Da PI: 6.1301 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.4 | 2.1e-15 | 170 | 229 | 1 | 53 |
G2-like 1 kprlrWtpeLHerFveaveqLGG.......sekAtPktilelmkvkgLtlehvkSHLQkY 53 k++++Wt+ L +rF+ a+++L + +A+Pk+il++m+v+gLt+e+v+SHLQ + HL.SW.v1.0.G042192.1 170 KAKVVWTNSLQNRFLLAIRHLSLdmcisllQPEAVPKKILDFMNVPGLTRENVASHLQIF 229 6799****************9532222222468*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-5 | 1 | 46 | No hit | No description |
PROSITE profile | PS50110 | 12.875 | 1 | 39 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF46689 | 1.79E-11 | 168 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 168 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-17 | 170 | 229 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSADDRETVL LRSAQSGMAL FILKPVSPND LKNVWQYAIK YKKGKSVVVI EEIDDSVSNC 60 DMVMNNDQGQ ISLMDTVVIH MKDSSGSIVA PGKEMVLFDE PNNNNIIGSS SDDVGIVGTL 120 VRKNYGKGDS SSTGNGTDID VDGNTTTDGS NKPPTHERDD YQERRKGPKK AKVVWTNSLQ 180 NRFLLAIRHL SLDMCISLLQ PEAVPKKILD FMNVPGLTRE NVASHLQIFN IWKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-15 | 169 | 231 | 4 | 58 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10142 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27070.1 | 7e-22 | response regulator 13 |