PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042114.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRF
Protein Properties Length: 417aa    MW: 44532.2 Da    PI: 9.1887
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042114.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2485129145
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                           d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  HL.SW.v1.0.G042114.1  85 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 129
                           79****************************************986 PP
2QLQ58.12.6e-202864137
                   QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          ++FT++Q+++L++Q+l+yKy+ an+ +P++Ll +i+k
  HL.SW.v1.0.G042114.1 28 GPFTPSQWMELEQQALIYKYITANVAIPSNLLIPIRK 64
                          59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-112864IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-142963IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6282964IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.66385129IPR014977WRC domain
PfamPF088794.4E-2186128IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAFAGYNSGG LNLNGGNNMY GAIIGAKGPF TPSQWMELEQ QALIYKYITA NVAIPSNLLI  60
PIRKAIDSSV GGWGSFHLGF SNNADPEPGR CRRTDGKKWR CSRDAVADQK YCERHMNRGR  120
HRSRKPVEGQ TGHSVAGATA NANATASKLM PLASSSPSST SVAVSGAGGS SNSLAISNHH  180
LLQQQNTSAT THLNRMQQQN TLGLSLLSKD QNAFLTQSFG LVASDSLLNL AQKNTEARNH  240
QQQQHQQQQH SLRHFIDDWP KTQPNRQALS WPEIDIQADR TQLSISMPLA SSDLFVPSSS  300
SPEKTSLSMS LGVGAGEHVG NRNWIPIAWE NSLMGGPLGE VLHHSNSSNN NNNGSVECKN  360
SSSSSSVLNL MTEGWDNSPP MGSSSPTGVL QKTAFGSLSN SSAGSSPRGE NNKSLD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733684e-55AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833808.11e-147PREDICTED: growth-regulating factor 6-like isoform X1
SwissprotQ6AWY31e-90GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A2P5G1011e-180A0A2P5G101_TREOI; Growth-regulating factor
STRINGEOY156571e-146(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-63growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]