PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G042042.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

TALE

Protein Properties

Length: 692aa MW: 75427.5 Da PI: 6.0226

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042042.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	3e-09	427	464	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + HL.SW.v1.0.G042042.1 427 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 464 664459******************************88 PP
2	BELL	127.5	4.7e-41	289	360	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+gsakpYt+lAl++iSrhFrcL dai++qi HL.SW.v1.0.G042042.1 289 EKQDLQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGSAKPYTALALQTISRHFRCLHDAIVGQI 360 6899*******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.3E-65	211	358	IPR006563	POX domain
Pfam	PF07526	1.0E-50	217	357	IPR006563	POX domain
PROSITE profile	PS50071	12.163	405	468	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	408	472	IPR001356	Homeobox domain
CDD	cd00086	4.58E-13	408	469	No hit	No description
SuperFamily	SSF46689	2.61E-17	409	475	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-29	411	474	IPR009057	Homeodomain-like
Pfam	PF05920	4.7E-18	425	464	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MATYYSSSNN QRDNAQMMYS REHLPTSYPE ASVIPSNMMM YMNTGSYSDA LAGTSQQQSN 60 CMEMPPMGPS DSTPQQQDIL SNLGGSRMGE HDFNEWRDGK NDMLVAHSMA GAPSIFHGGQ 120 NLQGQGLSLS LGTQISSGIQ MPSISFRNPN MGFSSFLSPN PSDSGEGGSC RNGSSRDEQP 180 RNNNVEYLTP GFPGGVNQDS SKGELSPYGL SSIARAVPSS KYLKAAQQLL DEVVNVRKAL 240 KQHDSEKAHG AQDQGMKSPR EGDDGSKNES TPGGGESASN SQPELSHAEK QDLQNKLTKL 300 LSMLDEVDRR YKQYYHQMQI VVSSFDAIAG CGSAKPYTAL ALQTISRHFR CLHDAIVGQI 360 KATRKSLGEQ DASGNIKGVG ISRLRYVDQQ LRQQRALQQL GMMQQHAWRP QRGLPESSVS 420 ILRAWLFEHF LHPYPKDSDK IMLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEEIGD 480 AEMDSNSSSE NAAAKATKGD IMTSEDRGED LQQSASSTGT ERCSTGHFMD SKTDHIPDVE 540 MAGSVGSATF HHSLTRREVD AEGEYGLMKQ RREEQRPGMD DCSSVFPDGI VQSDGGSERF 600 MAAAAAYHMS ELGRFGSGTG VSLTLGLQHC DGGSIPMNGG THHGFVAMRG DDLYNPAASS 660 MGAEAADFEC INSGNQQPRY ASSHLLHDFV V*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MATYYSSSNN QRDNAQMMYS REHLPTSYPE ASVIPSNMMM YMNTGSYSDA LAGTSQQQSN  60
CMEMPPMGPS DSTPQQQDIL SNLGGSRMGE HDFNEWRDGK NDMLVAHSMA GAPSIFHGGQ  120
NLQGQGLSLS LGTQISSGIQ MPSISFRNPN MGFSSFLSPN PSDSGEGGSC RNGSSRDEQP  180
RNNNVEYLTP GFPGGVNQDS SKGELSPYGL SSIARAVPSS KYLKAAQQLL DEVVNVRKAL  240
KQHDSEKAHG AQDQGMKSPR EGDDGSKNES TPGGGESASN SQPELSHAEK QDLQNKLTKL  300
LSMLDEVDRR YKQYYHQMQI VVSSFDAIAG CGSAKPYTAL ALQTISRHFR CLHDAIVGQI  360
KATRKSLGEQ DASGNIKGVG ISRLRYVDQQ LRQQRALQQL GMMQQHAWRP QRGLPESSVS  420
ILRAWLFEHF LHPYPKDSDK IMLARQTGLT RSQVSNWFIN ARVRLWKPMV EEMYKEEIGD  480
AEMDSNSSSE NAAAKATKGD IMTSEDRGED LQQSASSTGT ERCSTGHFMD SKTDHIPDVE  540
MAGSVGSATF HHSLTRREVD AEGEYGLMKQ RREEQRPGMD DCSSVFPDGI VQSDGGSERF  600
MAAAAAYHMS ELGRFGSGTG VSLTLGLQHC DGGSIPMNGG THHGFVAMRG DDLYNPAASS  660
MGAEAADFEC INSGNQQPRY ASSHLLHDFV V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	6e-17	414	471	1	58	Homeobox protein Meis1
4xrs_B	6e-17	414	471	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107836.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028943.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028944.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028946.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028947.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028948.1	0.0	BEL1-like homeodomain protein 6
Swissprot	O65685	1e-137	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A2P5E5J5	0.0	A0A2P5E5J5_PARAD; Knotted like homeodomain transcription factor
STRING	XP_010107836.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-117	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]