PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041831.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 454aa    MW: 51280.7 Da    PI: 7.1548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041831.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.92.1e-131834521373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+ ++++d e  ++l+++ + ++s +g+p+qRl ay++e++ ar   s++++y+al+++e +   s+e l+++++++e++P
  HL.SW.v1.0.G041831.1  83 LKNLLIACAKSLAENDIETFDKLIEKARATVSISGEPIQRLGAYMVEGMVARKEASGTNIYRALRCREPE---SKELLSYMQILYEICP 168
                           5789*****************************************************************9...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +lkf++++aN aI ea  +++r+Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p ++  + + le++g+rLa + +++++p+
  HL.SW.v1.0.G041831.1 169 YLKFGYMAANGAIAEACRNADRIHIVDFQIAQGTQWLTLLQALAARPNGPPHVRITGIDDPVNKyaRGDGLEAVGKRLATISQNFKIPV 257
                           *************************************************************999999********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           efn+ v     d++ e+L ++++EalaVn+ lqlh+++desv+++++rde+L++vkslsP+vv++veqe+++n+++F++rf+ea+++y 
  HL.SW.v1.0.G041831.1 258 EFNA-VPVFAPDVTREMLGIRSDEALAVNFPLQLHHTPDESVDVANPRDELLRMVKSLSPRVVTLVEQESNTNTTPFFHRFVEAMDFYL 345
                           ****.688899****************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s++++lpr+s+ ri+vE+++l+r+ivnvvaceg+er+erhe l+kW++rl++aGFk++pls+++++ +++llr ++ + y++ e+
  HL.SW.v1.0.G041831.1 346 AMFESIDVTLPRDSKYRINVEQHCLARDIVNVVACEGRERVERHELLGKWKSRLTMAGFKQYPLSSYVNCVIRSLLRCYS-EHYTLAEK 433
                           ****************************************************************************9999.66****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                           +g+++lgWkdr+L+s+SaW
  HL.SW.v1.0.G041831.1 434 DGAMLLGWKDRNLISASAW 452
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.84557434IPR005202Transcription factor GRAS
PfamPF035147.1E-12983452IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGPDDDVDEH RLIRPKPSYG KGTSEQSLKE ERQRGQEPGL IQHQTFLVSR PRQPVDVARI  60
EKRHKLMEEG SLHQQGLPSP DNLKNLLIAC AKSLAENDIE TFDKLIEKAR ATVSISGEPI  120
QRLGAYMVEG MVARKEASGT NIYRALRCRE PESKELLSYM QILYEICPYL KFGYMAANGA  180
IAEACRNADR IHIVDFQIAQ GTQWLTLLQA LAARPNGPPH VRITGIDDPV NKYARGDGLE  240
AVGKRLATIS QNFKIPVEFN AVPVFAPDVT REMLGIRSDE ALAVNFPLQL HHTPDESVDV  300
ANPRDELLRM VKSLSPRVVT LVEQESNTNT TPFFHRFVEA MDFYLAMFES IDVTLPRDSK  360
YRINVEQHCL ARDIVNVVAC EGRERVERHE LLGKWKSRLT MAGFKQYPLS SYVNCVIRSL  420
LRCYSEHYTL AEKDGAMLLG WKDRNLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-639045226378Protein SCARECROW
5b3h_A1e-639045225377Protein SCARECROW
5b3h_D1e-639045225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092296.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2P5CK430.0A0A2P5CK43_PARAD; GRAS transcription factor
STRINGXP_010092296.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-167GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]