PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G041823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HB-other | ||||||||
Protein Properties | Length: 242aa MW: 27379 Da PI: 8.1285 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.7 | 3.5e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft+ ++ e+e+ ++ n+ p +e LA+k ++ +qV +WFqNrR+ HL.SW.v1.0.G041823.1 13 RFTPIEVAEMEAILQEhnNSMPGREVLVGLAEKFsdsadrkgkiTVQMKQVWNWFQNRRYAI 74 58889999999999965599999999999999999999999999999************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.81E-12 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0077 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.572 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.3E-5 | 13 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.86E-5 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 13 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 5.0E-33 | 125 | 235 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTPIEVA EMEAILQEHN NSMPGREVLV GLAEKFSDSA DRKGKITVQM 60 KQVWNWFQNR RYAIRAKLSR TPGKLNVSSM PREDPMPVRN MPQSLTAPIP TPSGAGRGTS 120 ENSVMEFEAK SGRDGAWYDV ANFFSHRYLD SGDPEVLIRF AGFGPEEDEW VNVKKHVRQR 180 SLPCESSECV AILPGDLILC FQEGKEQALY FDAQRRRHDV RGCRCRFLVR YDHDQSEVRC 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 7e-36 | 125 | 237 | 4 | 121 | SHH1 SAWADEE |
4iur_B | 7e-36 | 125 | 237 | 4 | 121 | SHH1 SAWADEE |
4iut_A | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 7e-36 | 125 | 237 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899220.1 | 1e-156 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-121 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2P5F4T9 | 1e-157 | A0A2P5F4T9_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010098455.1 | 1e-155 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-111 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |