PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G041758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27544.9 Da PI: 8.7283 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.5 | 4e-42 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++ HL.SW.v1.0.G041758.1 45 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQS 133 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e HL.SW.v1.0.G041758.1 134 LQAELNAVRAE 144 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.917 | 44 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-42 | 45 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSRERERFDE IGKKIKRESS TDAGAHQMGR RHMLGPPGTL NTITPCAACK LLRRRCAQEC 60 PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD AANSLVYEAN VRLRDPVYGC 120 MGAISALQQQ VQSLQAELNA VRAEILRYKY REATTTTNNN NNNNSIINPS SSSSLHHHHH 180 LHHLALLSSN NSGNVSVAAP PPAGAPPQPP PPPQISTVQS LPITTTTSSS SSMYTTAEDY 240 NTISSENVPF FG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 37 | 152 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 37 | 152 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925198.1 | 1e-109 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 6e-89 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2P5AHJ8 | 1e-122 | A0A2P5AHJ8_TREOI; Wilm's tumor protein | ||||
STRING | VIT_13s0067g02380.t01 | 1e-108 | (Vitis vinifera) | ||||
STRING | cassava4.1_029925m | 1e-108 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-88 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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