PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G041675.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 321aa MW: 37011.5 Da PI: 6.6771

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G041675.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.4e-20	51	104	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le++Fe+++++ e++++LA++lgL+ rqV +WFqNrRa++k HL.SW.v1.0.G041675.1 51 KKRRLSSDQVKALERYFEMENKLEPERKAKLADELGLQPRQVAIWFQNRRARWK 104 45689************************************************9 PP
2	HD-ZIP_I/II	128.7	2.3e-41	51	142	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls++qvk+LE+ Fe+e+kLeperK++la eLglqprqva+WFqnrRAR+ktkqlEkdy+ Lk++yd+lk + e+L+k++e+L+++ HL.SW.v1.0.G041675.1 51 KKRRLSSDQVKALERYFEMENKLEPERKAKLADELGLQPRQVAIWFQNRRARWKTKQLEKDYNLLKSNYDSLKFSYEALQKQNETLTKK 139 9**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ HL.SW.v1.0.G041675.1 140 IRQ 142 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.61E-19	45	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.734	46	106	IPR001356	Homeobox domain
SMART	SM00389	1.2E-19	49	110	IPR001356	Homeobox domain
CDD	cd00086	9.21E-17	51	107	No hit	No description
Pfam	PF00046	8.1E-18	51	104	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.4E-21	53	113	IPR009057	Homeodomain-like
PRINTS	PR00031	7.2E-6	77	86	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	81	104	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.2E-6	86	102	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-14	106	147	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MKRFSSSESL GALVSISQPK ETNNNQGYSK EFQAMLDSLD QEDCGEEYTG KKRRLSSDQV 60 KALERYFEME NKLEPERKAK LADELGLQPR QVAIWFQNRR ARWKTKQLEK DYNLLKSNYD 120 SLKFSYEALQ KQNETLTKKI RQLNTKMSRQ SEESSQSVKE DHQSPISGHE SNGLDHSKTS 180 CDFQENNNNN NSNNNKGAEQ LLLLHHHHHH HHHETFGNYY AKSSKDGYSD SDSINGVTKE 240 DHNKPEYSLG PNGSSSSCSN TIQNWIQISD HNNYARAFPV KICQPQFMRM EDQTLFSSED 300 SCNFLSVDQA PTLHWYFPDQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	106	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885283.1	1e-121	homeobox-leucine zipper protein ATHB-6-like isoform X2
Refseq	XP_015885285.1	1e-121	homeobox-leucine zipper protein ATHB-6-like isoform X2
TrEMBL	A0A2P5D9T2	1e-144	A0A2P5D9T2_TREOI; Octamer-binding transcription factor
STRING	XP_010098637.1	1e-103	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1868	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-50	homeobox protein 16