PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041584.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 424aa    MW: 47723 Da    PI: 4.5575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041584.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36381292102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+yei+ed+++++++sws  +nsfvv+d+++fa ++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F++g+
  HL.SW.v1.0.G041584.1  38 FLTKTYEIVEDPATNDVVSWSGANNSFVVWDPQNFAITLLPKYFKHNNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFHRGQ 117
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i+r+k 
  HL.SW.v1.0.G041584.1 118 KHLLRNIRRRKG 129
                           **********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-3634127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.1E-3934127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6034127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MHSSSDQGIR QVKDELAAAD PVAPQPIEGL HDVGPPPFLT KTYEIVEDPA TNDVVSWSGA  60
NNSFVVWDPQ NFAITLLPKY FKHNNFSSFV RQLNTYGFKK VDPDRWEFAN EGFHRGQKHL  120
LRNIRRRKGA QPPPQYSHQA ASSLDPCVEL GRFGLDGEMD RLKRDKQVLM VELVKLRQQQ  180
QNTKTYLQTM EDRLKRTELK QQQMIYFLAK AMKNPGFVRQ LMEQKDKRKE LEEAIRSKRR  240
RQAIEQGNVN SVLEQVEVVV DDGDDEDDVD VVHIVDDHDH IAQSGGGSSS SSAGNFVKME  300
PHEDHHYSNT NMSAESFDVV EELADELAID MTAGVSCQNM INNTEEEVVL HVNNDQIGEL  360
QGSNSSSSTV HKDLIDAGFW INLLNENMEE GVVMGVDGAV EEDEEDVDVM VEQLGNYLAS  420
SPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-253612718120Heat shock factor protein 1
5d5u_B9e-253612727129Heat shock factor protein 1
5d5v_B9e-253612727129Heat shock factor protein 1
5d5v_D9e-253612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226240KRKELEEAIRSKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107707.11e-146heat stress transcription factor A-6b
SwissprotQ9LUH81e-119HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P5FWB31e-159A0A2P5FWB3_TREOI; Heat shock transcription factor
STRINGXP_010107707.11e-145(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B