PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041189.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 361aa    MW: 39700.6 Da    PI: 6.0146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041189.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08201248455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  HL.SW.v1.0.G041189.1 201 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 248
                           8*************************9....788889999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-15195266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-9195252No hitNo description
PROSITE profilePS5088814.526197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14197265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-6201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MENLSALTLT GSGSIGVGLQ IGESGFDSVQ FGEEIQRLIT VSPENASSFT ALLELPATQA  60
MELLHHVPES DGAKVAVDPH PKPFPQQPFG SNLTFLSDPA LIERASKFSV FAGEHSPETT  120
SSVPSNSSAN LEKVKNEPTE TDSNPNSSQP LVSDQKPLMK RKEREKKAKV SSKKSKNESK  180
EDAEKLPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI SGTALVLDEI  240
INHVQSLQRQ VEFLSMRLAA VNPRIDFNLD SILATANLQN GSVMEGNLPN MVSPLMWPEF  300
PLNGNRQQYQ QQWHLDALQQ PLWGREEDSH TFVTPENSLL TYDSSANSAS LHSSQLKMEL  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031128.10.0transcription factor bHLH48
SwissprotQ3EAI13e-98BH060_ARATH; Transcription factor bHLH60
SwissprotQ8VZ022e-98BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2P5CAU90.0A0A2P5CAU9_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010111436.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.24e-99bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]