PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041031.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 362aa    MW: 39199.1 Da    PI: 10.1525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041031.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31289346359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  HL.SW.v1.0.G041031.1 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGDHNHT 346
                           99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-16240285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-33275346IPR003657WRKY domain
PROSITE profilePS5081130.412282348IPR003657WRKY domain
SuperFamilySSF1182901.11E-26284346IPR003657WRKY domain
SMARTSM007741.4E-36287347IPR003657WRKY domain
PfamPF031068.5E-27289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVELMMAYG LDSFTSNMEE NSVKEAASAG IQSVEKFLRL ISQHDNYLHQ HQQVADVAVT  60
KFKRVISLLD RGRTGHARFR RSPSNPMSSS SSPSSSSSTP PPPPPQRQDG PGQDPSGSSS  120
PFQHNSNPKQ ELASAFKVYC PTPVLRLPPL PQNQNQVQSR QNHPMNSVVL APRNGSLEKK  180
DTVVSAATIN FSPSPCISGA NSFMSSLTGD TDSTVQPSFS SGFQLTSSTG RPPLSTSSFK  240
RKCNSVDAGA IRCGSSSGRC HCSKKRKSKV KRVVRVPAIS MKMADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSVRGCP ARKHVERALD DPTMLIVTYE GDHNHTHSVT EATAALVLES  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21275345271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093526.11e-159probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-105WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2P5CVE41e-165A0A2P5CVE4_PARAD; WRKY domain containing protein
STRINGXP_010093526.11e-159(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-83WRKY DNA-binding protein 7