PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040982.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 407aa    MW: 46739.6 Da    PI: 6.8417
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040982.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-093333682055
                           HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  HL.SW.v1.0.G040982.1 333 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 368
                           5679*****************************885 PP
2ELK36.79.3e-13288309122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK++LlrKYsgyL++LkqE+s
  HL.SW.v1.0.G040982.1 288 ELKNHLLRKYSGYLSGLKQELS 309
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.8E-21142186IPR005540KNOX1
PfamPF037902.0E-22143184IPR005540KNOX1
SMARTSM012561.3E-27193244IPR005541KNOX2
PfamPF037911.1E-22197242IPR005541KNOX2
PfamPF037891.0E-9288309IPR005539ELK domain
PROSITE profilePS5121310.999288308IPR005539ELK domain
SMARTSM011881.1E-6288309IPR005539ELK domain
PROSITE profilePS5007112.908308371IPR001356Homeobox domain
SuperFamilySSF466891.63E-19309383IPR009057Homeodomain-like
SMARTSM003897.7E-13310375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-27313374IPR009057Homeodomain-like
CDDcd000866.48E-12320372No hitNo description
PfamPF059201.6E-16328367IPR008422Homeobox KN domain
PROSITE patternPS000270346369IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MNNQDYNQMD ENSASRGNFL YSSANMGANS NYGRGNHDHQ LSVNSFHLQS TTAGGGGDHC  60
SSAFQSSTTG GPNHHHHHHH HHHLPIVKTE ASTSHHQHVQ KFHYDPNLMT RDHHQTVQQV  120
HDHHQLPENQ DDQSHRSNKE VETIKAKIIA HPQYSNLLEA YMDCQKVGAP PEVVARLGAA  180
RQDFESRQRS LVSSRETSKD PELDQFMEAY YDLLVKYRDE LTRPIQEAMD FMRRIETQLN  240
MLNNGGPVRI FTSDHDKCEG VGSSEEDQDN SGGETEVPEI DPRAEDRELK NHLLRKYSGY  300
LSGLKQELSK KKKKGKLPKD ARQKLLNWWE LHYKWPYPSE TEKVALAEST GLDQKQINNW  360
FINQRKRHWK PSEDMQFMVM DGLHPQNAAL YMDGHYMGDG HYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109441.10.0homeobox protein knotted-1-like 2
RefseqXP_024029913.10.0homeobox protein knotted-1-like 2
RefseqXP_024029914.10.0homeobox protein knotted-1-like 2
RefseqXP_024029915.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2P5EL320.0A0A2P5EL32_TREOI; Knotted-like homeobox transcription factor
STRINGXP_010109441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-140KNOTTED-like from Arabidopsis thaliana