PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G040708.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 672aa MW: 75032.6 Da PI: 7.9607

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G040708.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	98	119	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir+H HL.SW.v1.0.G040708.1 98 KCDKCSREFCSLINYRRHIRVH 119 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.951	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MLAVLEYFLL HLHVYFQDAQ MPIAKLKAAN IPDVMKPEEG NDSLDAIIKQ AIGKESFLNF 60 SRAGDSSAQF IQLLHALEQQ DHRQSWSLVS PTKMQMQKCD KCSREFCSLI NYRRHIRVHH 120 RLKKLDKDSA KSRDMLGAFW DKLPLEDAME VVSFKNVEEA PGSSIIKALS SHVRKSVFSS 180 PPHPYLKAGS ELLDIVQGRP SRFPISSQEL FNVLDIASEK TFLSGPAISM QRYVFDGEAG 240 KIGLETKNLV ACTSFLLEQK LVKAWLAEKD AEALRFQKLL VEEEEAAQKR QAELLERKKQ 300 KKLRQKEQKA KERRHGEKAD SDESIDQVLE AMPQVEASSL VECDNRRDNL DLPNHIPLSI 360 VDHFNSDGNL DSDFLIGSDC GHIDSGSNSC VERRIVQGSG RWKRWQMSPK SQFHAAQSSQ 420 SSKLGVQQNH GTHKDSRTGV TGHKVWSRKS KPETNVDALK AGVKKEELNE LDQIKYSEVL 480 IGSISVTLGN CSEEGNNLSE ACDTCLTEHQ LPKNSVQVKP NKSNPVRSGT SRSTVKHWRP 540 VSQNGTKVPN SVEDRDREIE ADANANANAE KGHTESLSSG NSEFSSHAAQ VFLAQRWKEA 600 IAADHVKLVI TSDFFPPDEN DTQETASRTF KLHRRCVLGD AKNQLVNVDI LGSSTAKAKI 660 KDISKQRTSP T*

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MLAVLEYFLL HLHVYFQDAQ MPIAKLKAAN IPDVMKPEEG NDSLDAIIKQ AIGKESFLNF  60
SRAGDSSAQF IQLLHALEQQ DHRQSWSLVS PTKMQMQKCD KCSREFCSLI NYRRHIRVHH  120
RLKKLDKDSA KSRDMLGAFW DKLPLEDAME VVSFKNVEEA PGSSIIKALS SHVRKSVFSS  180
PPHPYLKAGS ELLDIVQGRP SRFPISSQEL FNVLDIASEK TFLSGPAISM QRYVFDGEAG  240
KIGLETKNLV ACTSFLLEQK LVKAWLAEKD AEALRFQKLL VEEEEAAQKR QAELLERKKQ  300
KKLRQKEQKA KERRHGEKAD SDESIDQVLE AMPQVEASSL VECDNRRDNL DLPNHIPLSI  360
VDHFNSDGNL DSDFLIGSDC GHIDSGSNSC VERRIVQGSG RWKRWQMSPK SQFHAAQSSQ  420
SSKLGVQQNH GTHKDSRTGV TGHKVWSRKS KPETNVDALK AGVKKEELNE LDQIKYSEVL  480
IGSISVTLGN CSEEGNNLSE ACDTCLTEHQ LPKNSVQVKP NKSNPVRSGT SRSTVKHWRP  540
VSQNGTKVPN SVEDRDREIE ADANANANAE KGHTESLSSG NSEFSSHAAQ VFLAQRWKEA  600
IAADHVKLVI TSDFFPPDEN DTQETASRTF KLHRRCVLGD AKNQLVNVDI LGSSTAKAKI  660
KDISKQRTSP T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	302	ERKKQKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029209.1	0.0	uncharacterized protein LOC21389944 isoform X2
TrEMBL	W9SNP6	0.0	W9SNP6_9ROSA; Uncharacterized protein
STRING	XP_010108360.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-118	C2H2-like zinc finger protein