PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G040701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 292aa MW: 32215.6 Da PI: 6.4238 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.2e-38 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ HL.SW.v1.0.G040701.1 7 PCGACKFLRRKCINGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVV 95 7*************************89************************************************************* PP DUF260 89 qlkaelallke 99 +l+a+la+lke HL.SW.v1.0.G040701.1 96 NLQAQLATLKE 106 ******99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.903 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MTGFGSPCGA CKFLRRKCIN GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAHLPVTD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LATLKELQLA SSQRSQSFNN 120 GSGTVVNLQA QLATLKELQL ASFQRSQSFN NGSGTVNPNN GKFSGKVESR DDDDRDHHDH 180 GAQYGWFEME SSKLSSNYST SAAGTAMAYN DKNGVLIINP NPNSSGNHYN KVDQIIPDNH 240 HENICYGSFE ETNNSFSMSS FESIMQPNYY YRPWGAFQEY CDELQSMVQN S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111894.1 | 2e-90 | LOB domain-containing protein 29 | ||||
TrEMBL | A0A2P5FBA9 | 1e-100 | A0A2P5FBA9_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010111894.1 | 9e-90 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 8e-55 | lateral organ boundaries-domain 29 |