PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G040588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 594aa MW: 63838.6 Da PI: 10.0484 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H HL.SW.v1.0.G040588.1 30 FICEVCNKGFQREQNLQLHRRGH 52 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ HL.SW.v1.0.G040588.1 106 WKCEKCSKRYAVQSDWKAHSKTC 128 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-7 | 29 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-6 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 2.9E-5 | 30 | 52 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 30 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 71 | 101 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 94 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.76E-7 | 101 | 126 | No hit | No description |
SMART | SM00355 | 130 | 106 | 126 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MAAASSSSVP DPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ 60 KTNKEPKRKV YLCPEPTCVH HDPSRALGDL TGIKKHYSRK HGEKKWKCEK CSKRYAVQSD 120 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPPNLSA IGANLYGGSN 180 ATSLGLSQLG PQFSALQDQT NQTGDMLRLG GASHHRSAPQ APSSGQFDHG HILSPTSFRA 240 QQQPPAGFFM TAEPNQQQYH HQEDHHHSHH HPHQSQHGFL PNKPFHGLMQ FSEIQSNANN 300 VNPSSGLLIS NHFNAENGTS GGGGGGGEGS NIFSGQIGGD QISSSPVSSL YSTSVQNNHA 360 AAVAAAHMSA TALLQKAAQM GSTSTTNNTA SLLRSFGSSS SSTAGGGQNK PSDRPTMAPA 420 SFGGGGAGGG SSGGGLFGSD NDQSHLQDLM NSFAAAGGNN SMFGGNAFGG YESASRASLE 480 HQDQKLQANS SGAGGISAMN NSIGGGSDRL TRDFLGVGQI VRSVSGGFSK REQQQQQQQH 540 QHRGIIEMVV ALGGKESKKE RKKRKERKKE KEEKKKKKRY YYYITTTTTQ REL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-35 | 102 | 163 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 5e-35 | 102 | 163 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 560 | 565 | RKKRKE |
2 | 562 | 578 | KRKERKKEKEEKKKKKR |
3 | 568 | 577 | KEKEEKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093356.2 | 0.0 | protein indeterminate-domain 5, chloroplastic isoform X2 | ||||
Swissprot | Q9ZUL3 | 1e-128 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2P5E0V0 | 0.0 | A0A2P5E0V0_PARAD; TFIIH C1-like domain containing protein | ||||
STRING | XP_010093356.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-109 | indeterminate(ID)-domain 5 |
Publications ? help Back to Top | |||
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