PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040524.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 217aa    MW: 23768.7 Da    PI: 8.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040524.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11150195655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  HL.SW.v1.0.G040524.1 150 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 195
                           689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-15147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-11148199No hitNo description
Gene3DG3DSA:4.10.280.104.2E-14149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-9150195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
GFSVTRGTGG YGSQGGTNCG PGVSRLKSQL SFTRQDCLSQ ISEVSENVID GMSSENGHHN  60
ASHSFATSFG MDSWDNNTNS IVFSAPQSKR AKNMDGDLYN CLNVLDTQFQ FSLPQTTLEM  120
AAVEKLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI SGKLKKLQDL VPNMDKQTSY  180
ADMLDLAVQH IKGLQNQVKK LHTELENCTC GCKQNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887121.11e-131transcription factor bHLH128 isoform X1
RefseqXP_015887122.11e-131transcription factor bHLH128 isoform X2
RefseqXP_015887123.11e-131transcription factor bHLH128 isoform X3
RefseqXP_023925304.11e-131transcription factor bHLH128-like
SwissprotQ8H1024e-78BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2P5FCM91e-128A0A2P5FCM9_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_004296710.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]