PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040396.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 379aa    MW: 41575.2 Da    PI: 6.695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040396.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17266300135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  HL.SW.v1.0.G040396.1 266 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 300
                           99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.5E-778355IPR016679Transcription factor, GATA, plant
SMARTSM004017.9E-18260310IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374260296IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15261297IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.33E-15261324No hitNo description
CDDcd002024.73E-14265312No hitNo description
PfamPF003201.4E-15266300IPR000679Zinc finger, GATA-type
PROSITE patternPS003440266291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEAPELYINQ NNMTSSAAGG GGEHFAVEDL LDFSNEEDAI VTDVDGPYCE ISAFPGNSTD  60
SSTLRTTTAT AALDTSCNSS SFSGCEPNYL NDFGSRRFAE GGQFSSDLCV PYDDIAELEW  120
LSNFVEESFS SNDLQRLQLI SGIKVRTTTD VSSETAARNF QPEPNRHGTN PNIFFNSELM  180
SVPAKARSKR SRAPPCNWTS RLVLMSPTAS FNSLPPPESS QDVVVSAPPA PTGPTTTTMA  240
KKTVKGAPKK KDVSEVADSG GEGRKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL  300
VPEYRPAASP TFVLTKHSNS HRKVLELRRQ KEMVRSQHQP QFLHHHRQHH QSMMFDASNN  360
GEDYLIHQHV GPDFRQMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884916.11e-144GATA transcription factor 12
SwissprotP697813e-90GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2P5D3G21e-148A0A2P5D3G2_PARAD; GATA transcription factor
STRINGcassava4.1_010069m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-88GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]