PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040293.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 314aa    MW: 35970.4 Da    PI: 5.2359
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040293.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.86.5e-09401021276
              trihelix  12 earremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           +    +e +  ++ +  ++W  +++++ ++ + r+ +qC+ kw+ l  +y kik++e+k   + +
  HL.SW.v1.0.G040293.1  40 NEIAAVEADCLKALSSYQKWMIIAENCTAQDVPRNFNQCRRKWDFLLLDYNKIKKWESKS--RGT 102
                           555566666666777889****************************************94..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-752101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAQSHEDSSI REPLRISGSR RTRSQGAPDW SFMDSLILVN EIAAVEADCL KALSSYQKWM  60
IIAENCTAQD VPRNFNQCRR KWDFLLLDYN KIKKWESKSR GTSFWSMGSD RRESLGLPRD  120
FDDELFLAIE NLIMVRENQP DTDPDSDGEA KDDMVDVVKE LGSKRQRRRL TSLENSSWKS  180
VSEEISIKSQ AERKPPKFHV EDVRSSPEVK PLDWTSTKRK PQKGNVVENE SHETTEAEHK  240
EQRFALILRE NAEMVKSIVS QNAQYEVVKV ENGEFGQTKS AEFVRRQGDK LIACLGDIVK  300
SLDHLCDLVQ ECE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896191.11e-105trihelix transcription factor ASR3
TrEMBLA0A2P5G1E41e-134A0A2P5G1E4_TREOI; Myb-like domain containing protein
STRINGEMJ282904e-81(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.13e-69sequence-specific DNA binding transcription factors