PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G040003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 35695.9 Da PI: 8.6923 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7e-30 | 169 | 228 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d+++++ tYegeHnh+ HL.SW.v1.0.G040003.1 169 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSVDDQSILVATYEGEHNHP 228 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-29 | 158 | 230 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.854 | 164 | 230 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-25 | 165 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-34 | 169 | 229 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 170 | 228 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
TICGGDSRSS NLAWNLQLVN SFSKAMDYSS SCVDTSLDLN SKPYHRELYD APLPPPTGPL 60 VEELNRVSAE NKKLTEMLTM MCENYNSLRN QLAEYMNKNP AEKELSPSKK RKSESSNNNS 120 NNIIGANGNS ESSSTDEESC KKPREEEPIK TKVWKTCVRT EATDTSLIVK DGYQWRKYGQ 180 KVTRDNPSPR AYFKCSFAPS CPVKKKVQRS VDDQSILVAT YEGEHNHPQP SPLEATSGQN 240 RGMTLTSVPC SANAISSSGP NITLDFTKPK SGTDSKSAKP ARTESPDVRK FLVDQMASSL 300 TKDPNFTAAL AAAISGRIYQ QKSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 168 | 230 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG983332 | 0.0 | HG983332.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky2 gene), clone 3320. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092197.1 | 1e-153 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-111 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A0D6DQX3 | 0.0 | A0A0D6DQX3_HUMLU; WRKY transcription factor | ||||
STRING | XP_010092197.1 | 1e-153 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-107 | WRKY DNA-binding protein 40 |