PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 21078 Da PI: 9.8611 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 1.9e-22 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++e+ s rqvtfskRr g++KKA+EL +LCd+++avi+fs+ gk + + HL.SW.v1.0.G039868.1 3 KVEDRSARQVTFSKRRCGLFKKANELATLCDVDIAVIVFSPGGKAFSF 50 6899***************************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-23 | 1 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.24 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-24 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-11 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEKVEDRSAR QVTFSKRRCG LFKKANELAT LCDVDIAVIV FSPGGKAFSF GQPNVYSITN 60 RFLLEQQQGF SKKITTRRRS TRRRSQSKVF DKLNEQVNER SMELHYEKEQ KSSIEVSSDE 120 KGLMKMKKKK GKSSSSSDDD DDLSESEMMK FKEELESLKE KVKERINVME ASSTLMMLSN 180 DAF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-27 | AGAMOUS-like 29 |