PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14345.4 Da PI: 9.7561 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.6 | 9.5e-15 | 3 | 71 | 25 | 99 |
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 e+p+kf nvh +FGasnv+kl +++ +++r++ y+Ae r++dP y+ +g+i+ lq+q+ +l++el+++++ HL.SW.v1.0.G039799.1 3 ERPQKFVNVHNIFGASNVSKLHNEVLPHQRPA------YKAETRMKDPAYNYLGTISVLQRQVIRLQKELDATNT 71 689***************************95......********************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.8E-12 | 3 | 70 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MPERPQKFVN VHNIFGASNV SKLHNEVLPH QRPAYKAETR MKDPAYNYLG TISVLQRQVI 60 RLQKELDATN TDLMRHAHTI DHHYVAKSIH PRFGLAHIDH SSGTLRSILT YFDPSSGVDP 120 IVPVFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 2 | 77 | 34 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 2 | 77 | 34 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029135.1 | 1e-35 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_015879300.1 | 1e-35 | LOB domain-containing protein 25 | ||||
Refseq | XP_015897788.1 | 1e-35 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 6e-31 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2P5EFD3 | 2e-36 | A0A2P5EFD3_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010029135.1 | 4e-35 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-33 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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