PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NF-YC | ||||||||
Protein Properties | Length: 262aa MW: 29243.9 Da PI: 6.5834 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.4 | 6.9e-56 | 75 | 178 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trt HL.SW.v1.0.G039795.1 75 QLQNFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRT 163 89******99999**************************************************************************** PP NF-YC 87 difdflvdivprdel 101 difdflvdivpr++l HL.SW.v1.0.G039795.1 164 DIFDFLVDIVPREDL 178 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.68E-33 | 65 | 169 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 97 | 160 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-37 | 98 | 175 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDHQGHNQPQ SMMMGGGGGA QMAYGYQSNQ MGGNPTHGSV GGIQSSSQPG GAQLAQHQLA 60 YQHIHQQQQQ QLQQQLQNFW ANQYQEIEKV TDFKNHSLPL ARIKKIMKAD EDVRMISAEA 120 PVIFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREDLKD 180 EVVASIPRGN VPVGGPADAL SYCYMPPQHA PSQVGAPGMI IGKPVMDPSM YAQQPHHPYM 240 AQQMWQQQQQ QPDQQQSSSD R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-62 | 82 | 175 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 153 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024926525.1 | 1e-144 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 1e-85 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2P5C643 | 1e-156 | A0A2P5C643_TREOI; Nuclear transcription factor Y subunit C | ||||
STRING | XP_008246497.1 | 1e-143 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 7e-82 | nuclear factor Y, subunit C9 |