PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039430.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 439aa MW: 48633.2 Da PI: 5.9786

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039430.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	68	129	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+sss HL.SW.v1.0.G039430.1 68 PDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGRRRNKHSSS 129 68999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-30	56	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	70	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
DECREEATKA EVEDTEERCC EHDSFSDSNG KGNSYQNHVQ ENEVTCNPEE NRGDESDRST 60 KEKILKRPDK ILPCPRCNSL ETKFCYFNNY NVNQPRHFCK NCQRYWTAGG TIRNVPVGAG 120 RRRNKHSSSQ SHQETTNDSA VVVTQVDCHN VTSNQSPSFN RLPASARLDN GMGEGLKFSS 180 DTPLCESMEA KLIIKDQKRS DIESATFRDS EELSLSSNSS NAPSSHDSSC LRIEDNSADH 240 THPMQCYPVP QWAYPWNPGW SVMMVGQNGS NPNPSSVGAL PMVSVPGFSA PNTPFPFVPA 300 SYWGYMPSWD AQNWTQPFRY AGSRSPSSST VNTSCSSNSS PTLGKHSRDT NMQAEEKTEQ 360 CLWVPKTLRI DDPEEAAKSS IWSTLGIEPD KNTPIMRGGI FKAFQPKSNA NSRSSDADQV 420 LQSNPAALSR SHSFKEST*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

DECREEATKA EVEDTEERCC EHDSFSDSNG KGNSYQNHVQ ENEVTCNPEE NRGDESDRST  60
KEKILKRPDK ILPCPRCNSL ETKFCYFNNY NVNQPRHFCK NCQRYWTAGG TIRNVPVGAG  120
RRRNKHSSSQ SHQETTNDSA VVVTQVDCHN VTSNQSPSFN RLPASARLDN GMGEGLKFSS  180
DTPLCESMEA KLIIKDQKRS DIESATFRDS EELSLSSNSS NAPSSHDSSC LRIEDNSADH  240
THPMQCYPVP QWAYPWNPGW SVMMVGQNGS NPNPSSVGAL PMVSVPGFSA PNTPFPFVPA  300
SYWGYMPSWD AQNWTQPFRY AGSRSPSSST VNTSCSSNSS PTLGKHSRDT NMQAEEKTEQ  360
CLWVPKTLRI DDPEEAAKSS IWSTLGIEPD KNTPIMRGGI FKAFQPKSNA NSRSSDADQV  420
LQSNPAALSR SHSFKEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024457.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5D0M7	0.0	A0A2P5D0M7_PARAD; Zinc finger, Dof-type
STRING	XP_010086689.1	1e-176	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-68	cycling DOF factor 2