PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039398.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

M-type_MADS

Protein Properties

Length: 317aa MW: 35068.9 Da PI: 8.6103

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039398.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.8	8e-25	15	59	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA+ELS+LCd+++a+++fs++gk HL.SW.v1.0.G039398.1 15 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIALLMFSPSGK 59 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-30	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.511	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-24	8	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-22	17	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-20	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MPPLSRMGKL KLKIKRLEST SNRQVTYSKR RNGILKKAKE LSILCDIDIA LLMFSPSGKP 60 TLYQGERRGY HKVCSINSSR KSKKALKKTF KKLDHDVNVQ DFMGSSSQTV EDLMSQVRVL 120 QAQLTGLQRR LRCTFGAFAI GLQNEMYSPL MVGNAQEAQS LSWIPNNENQ PLILLGEPSF 180 LPRGGIQCAT DVSLPGCSSY FSNGSGKQME AGDPGQLNNM ERGGCSLNEL SRSAGLNLDF 240 GEHYAYPSFE TSLQDDKKLK TDTEMNVQAT SVDYQVNNNC ELPTSIYDNA QHAWISAFGP 300 CGLALYNENA CQQELK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019573.1	1e-155	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_024019574.1	1e-155	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	8e-58	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2P5AJN8	1e-145	A0A2P5AJN8_PARAD; MADS-box transcription factor
STRING	XP_010093603.1	1e-131	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-52	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]